LOCUS NC_026737:7 10057 bp DNA linear BCT 09-NOV-2016 DEFINITION Trypanosoma brucei gambiense DAL972 chromosome 4, complete sequence. ACCESSION NC_026737 SOURCE Trypanosoma brucei gambiense DAL972 chromosome 4, complete sequence. COMMENT locus start: 1422000; locus end: 1432056 COMMENT n1_4mer:GRV/n1_4mer:RV = 1.278091; n0_4mer:D = 35.274805; n0_4mer:PS = 33.414545 FEATURES Location/Qualifiers source 1..10057 /organism="Trypanosoma brucei gambiense DAL972 chromosome 4, complete sequence." gene 2116..3210 /gene="" /locus_tag="" /db_xref="1424115..1425209" CDS 2116..3210 /gene="" /product="variant surface glycoprotein (VSG, atypical)" /translation="MQVQRTTKEVLHKAVAAAVPVLFMMLMRCGKAQTITEPSSDKVT NLCTEAKYTEYLANHIVAEAEEPEHAISIMQIYGEAWNLLAASTNQTDKRAATYALAT YMSSAATQAKQLQSGKYRAAVLAATYLQRRSALTRTLQAMRVKGRSGAGQVNKQVGVG ASCSHKETPTLRYEGDCGRSGNVNIYPESIAVNLRTATHIKLLNSSKLRPLALEHSVN VQGLSSWEETKVKAEGCRAVSGNGYYAEFVASTKESDIGSTVAPIRIFTGGNASANCA VLENAKMKSEKDNDLLINKICNYIKKPDPHIINVSSLTPAMLANTTAVRVAFRSFIHA ATGKAPSDGEIEFQLKTFTDGTSNTSQETS" gene 3366..4079 /gene="" /locus_tag="" /db_xref="1425365..1426078" CDS 3366..4079 /gene="" /product="variant surface glycoprotein (VSG, atypical),(fragment)" /translation="NCAVLENAKMKSEKDNDLLINKICNYIKKPDPHIINVSSLTPAM LANTTAVRVAFRSFIHAATGKAPSDGEIEFQLKNLYGWDKQHFTRDFITILKTKNVTY HTDSGFVTETFLDAAKNENAHKVLIYLKGQRAVAQEAKQAQTDESEIYKTVCGGEGQE ECKLDEKKDMEKSNETQMRKWPKALQWMMARQGGNCKTIQQDDCKGDCTWDEGACDGA VGISASMNIPLFMAFLLLA" ORIGIN 1 gcgacggtaa agcaaataat ctggggagtg cgttagatta gaactttttg taaatacaca 61 atacgtagtg acagtgaact ttgcactacc aaagaaaaaa aaataataat aataacaaat 121 taacggctta tcaaaactaa gccaaatagc ctagcaacaa cagaaggata tgccttgtag 181 acaaaacttc aaactttaga agtataacca tattgataag acatattctg aagctccgtt 241 acttccaaac gtgcaaggtg cactgaaggg tttaaaaatc aaaagtatga gccgcctgga 301 gatggtggct gtcctgccga tactacgtta gttggaatcg ctggctcact gtgaggtgga 361 aagctaacca gaagaagcaa gcggcgaata taacgcaaac acatatgaag aagtgatcac 421 aactaaacca gcctacccag gtaaagaagt ctctgaatga tacatcaaag aatacgaggt 481 ttatcttgat ggactaacaa acttacatga gacgcaacaa ctgcccgagg aaacaggaag 541 cctagagttc aaataacaca acgaataaca aagtgggcaa agtgaactgg catgcctcaa 601 ccaactgcaa agcgtaactc acaaggactc gtctaacgta ccattagagt tcagaaagca 661 tgctgtacct tatggtgcac taatggaacc aggcagcaag gcgacgaggt acggcaaagg 721 ccgtcacaaa ctgcatgctc aaacaaggta aacataagag atgccaaggg gatgagaaat 781 tcttgtaaag tggatatgtc ttagggagct attggcatta tctcaggcac tagaagccga 841 gtacaaaggg acttgcaatc actgtgcggc aattatagtt tctcttgttt cgccggcggc 901 gaccaactaa cggacctgag caaaaagtgt gtcgatggag gaacgcaact caaccaaatt 961 cccatcgcca acatcaggga gagaagcaga gacgcctttc caacaaagtt gggttaccaa 1021 tccaccgtgg ctcatgtact gagtgcattc atttcaccat tatgctaaaa tgtttccatc 1081 atccatttta taaactatca gaatttggat agaaaatatg ctaaggtttt aaattttttt 1141 tttttggggg gggggggggg gaattcgtga aactattgca ctgtaatcga tctctttaag 1201 atttgccttc atctctttca tcccctattt tcttttactc gtcacatggt ttgagctcaa 1261 gaatcaaact ccgagaaagt gagaaactcg tcgaaaaaac aaaatttcgg tgaggacgaa 1321 cgtgggtttc tacgatgaaa ccgacctttt aacaagttgg acatatgaaa aacacaacca 1381 tccagagtga caatttacgt gtttgaatta tttctattgg attaaaagtt taatattcac 1441 cctcattttc gtttttgaag ggaaatgttt ttagactaaa tcgttgagaa atgagttttt 1501 ttttctattg ccacttatat gacacctagc agttatggtt taattggatg ctaaggttat 1561 atttgtgtaa aatggaataa attaatttca aaacgatcac gttgtgacac tatatatttg 1621 catacaacca tgtcccgggg tgaataattg acggccttcc actaacactg atggggaaac 1681 aacatgacag cgtgcaagaa aaaaattatg aatgagagaa accgccagct cttttatgcg 1741 ggggctaagg gtgacatgca acgtagcatt cggaagggcc agggcctctc atgttgtgcc 1801 acgataatgt cacttaaagc tacgacacaa atatcgttaa gatatgccaa cgctagcgtc 1861 gcattcattt ctcggctcct tgaatattac aaacgctgct ggcgtcccgt gaacatagca 1921 tctccttagg gacttgtgta ttaagacata tttcgttaag ttgttaaatt tattgttagg 1981 acaaccgctg tctgctgcgg ggccacaaat tttatcaatg acataactat aaataaaaag 2041 ccaagttcca atcatcaaca aagaagttaa agacacaaag acagcgaaac acattacacg 2101 gagggaaagg agccgatgca agttcaacgc actaccaaag aagtgttgca caaagctgtt 2161 gcagcagccg tgcccgtttt attcatgatg ctgatgaggt gtggcaaggc gcaaacaatc 2221 acagaacctt cctcggacaa agtgacaaac ctctgtacag aagctaagta tacagaatat 2281 ttggcgaatc acatcgtagc ggaggcagaa gagccggaac acgcaatatc catcatgcaa 2341 atttatggag aagcatggaa tctccttgcc gcaagcacaa accaaacaga caagcgtgcc 2401 gcgacatacg cccttgccac gtacatgtcc agtgcagcga cacaagcaaa gcagctccaa 2461 agtgggaaat acagagcagc agtcctggcc gccacctacc tgcaacggag gtcagcgcta 2521 acgcgcacgt tacaagcgat gcgagtgaag gggagatcag gagcggggca agtaaataaa 2581 caagtaggcg tcggcgcatc atgttcacac aaggaaacac cgactttaag atacgaaggc 2641 gattgcggga gaagcggtaa tgtcaacatc tatccagaat caattgccgt aaatttaagg 2701 acagcgacgc acatcaaact gttaaatagc agcaagctaa ggccgctggc gttagagcac 2761 tcagttaatg tgcaagggct ttcgtcgtgg gaagaaacaa aagttaaagc cgaaggatgc 2821 agggccgtgt caggaaacgg ctattatgct gaatttgtag cgtcaacgaa agaaagtgat 2881 ataggcagca ccgtagcacc gattaggata tttactggcg gcaatgcgag cgcaaattgc 2941 gctgtgctag aaaacgccaa gatgaaatca gaaaaggata acgacctact gatcaacaaa 3001 atatgcaact atattaaaaa acctgatcct catatcataa acgtatcgag cctaacgcct 3061 gccatgttag caaacacaac tgcagtccga gtggcgttca gaagcttcat tcatgcagca 3121 accggtaaag cacctagcga cggcgaaatc gagtttcaac taaaaacctt tacggatggg 3181 acaagcaaca cttcacaaga gacttcataa caattctgaa gacaaagaac gtgacgtacc 3241 acactgactc aggattcgta actnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3301 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 3361 nnnnaaattg cgctgtgcta gaaaacgcca agatgaaatc agaaaaggat aacgacctac 3421 tgatcaacaa aatatgcaac tatattaaaa aacctgatcc tcatatcata aacgtatcga 3481 gcctaacgcc tgccatgtta gcaaacacaa ctgcagtccg agtggcgttc agaagcttca 3541 ttcatgcagc aaccggtaaa gcacctagcg acggcgaaat cgagtttcaa ctaaaaaacc 3601 tttacggatg ggacaagcaa cacttcacaa gagacttcat aacaattctg aagacaaaga 3661 acgtgacgta ccacactgac tcaggattcg taactgagac atttcttgat gcagctaaaa 3721 acgaaaacgc acacaaggta ctgatctatc taaaaggtca aagagcggtg gcacaagaag 3781 caaagcaagc acaaacagac gagagcgaaa tctacaagac ggtctgcgga ggtgagggcc 3841 aagaggagtg caaattggat gaaaagaaag acatggagaa atcaaacgaa actcaaatgc 3901 ggaaatggcc taaagcactc cagtggatga tggcacgaca aggaggaaat tgcaaaacaa 3961 tacagcagga cgattgtaaa ggcgactgta catgggatga gggagcttgt gacggcgcag 4021 ttggaatttc tgcttcgatg aatattcctc tgttcatggc atttttgctt ctagcgtaaa 4081 aatttattgg aaaatcatat tgtagcaaac attaattttt ttctggaaat atcttaatgt 4141 agtggaattt gcatttttat ggaaagatct tattatacga aaccgtatct ttgttgaatt 4201 atcttggata aattttacat tcatcttgtc tatatgttat atcatacatt ttttaaaatg 4261 tgcgtttgta tttcaacgct ttttgcaaac atgtggaaac tttgagagat cgtttttgtt 4321 gttgtacaaa tttgatcttt gaatgcaaag tggcatgttg gtgggatgtc gaaaatgggt 4381 gctatttaga atatttttgc tattatggtt tattcgaaga aatttatgtt cacctttgaa 4441 ggtgtgaaaa tgtttaaatg ttttcaaatg tttttgactt gtgggtataa cgtggtagag 4501 tgataggggt gtgaaaaatg agtgtgatta tgaaaacttg ctattttaat ttagtttatt 4561 ttatggatat taatagttat taagagtagt ttaaggttat gatattaata gcagtatagt 4621 aatagtgtgc gtgccatgta agtgcacata ctaacattat ggtaagagtg gtggtgcaga 4681 acgactggag acaaaataga agcagttaag ctgatgccaa gggcacagtg ggagttagca 4741 agtgagtggg agaggaggag gacgaggagg atattattaa aacaaaagca gaaacacagg 4801 tagatggaga gaaaaggtaa tgaaatatgc gcagtttttt tcattgtaca tttatcctgc 4861 acgtgctgcg ctagactcgc gacagttcct gtggctattc aaaccggcag gggtcgttga 4921 tcacagccgc ggttccatcc ttgattcatc caatgaaacc ttgaagctga ttgacttatc 4981 ctcatattca gcttcacggg cgcgcttcct catggctctt gcagtgcaca ccccttacga 5041 cttcgctgca acagaagtgt ggttgtatgc ggaatccaac ttctttggcg atcggtgcct 5101 cttcacggct cgagcggtcc cagatgttga ctctaagatc gggggcagat gggctcccca 5161 gcttgaagag ctccttcaga aagccggtta gttgcgcact gaagaacact tccccgtcct 5221 tcagggtttc cataccgtgc tttcccttta gcacttgcaa gcttgggcat tccaagaggt 5281 gcgccgcagc ctccttacac tcgaccttca ccgagtaatg ctcattctcc ttcctcagtt 5341 ggccctgctt cgcctgtagg tgcatcgtca ggaactgctt gagtgtgcac ttcattgtgt 5401 agtatgagca gtggggtgat ctttgcaaaa gaggtgttac cgctactgtg cggtccttca 5461 gcttccattt cggtgccgtg gcgtgcgcgt ttgccaaacc agtgagcacc actgcttgta 5521 cacactgctg tttccaccgc acacattgtc cattccctct ttgccttctg tgtggcggac 5581 taccggaaga cgcttaggcg gtctttcccc attgtccctt cctgctgact ccaatgaccc 5641 actcacctca ctctgtgcct gagcctctgc tctcactacc tttcgcttcg gcttcacgcg 5701 tggctgagga cacaatgact cgtcgtgacc cgggtgcttt tccagcatgt gtcgcagcaa 5761 ccatctgtaa tgatattgct ttctaaaaat ggaacacgcc actgtaactg actgcttcgc 5821 cacgtccgag tcttcagagt tcgtgttcga ggttggttcg tacttgtgcc tggtgggcca 5881 tgtcttgctt ttgaggacgc gttggcacct ctggcataca aattcctttt tatcctgttc 5941 ctcctgctct gcatcgccat cactgtcgga cgcgtcctgt gactctatgg cgctgcgcct 6001 taactgcttt tccgggtttt tctgcagcca cgcgtgtaca gtgtactttt tcgcacacca 6061 acgccatttg agtgcgttgc cattatcggc cccatcttac tccactgctg gcactctatc 6121 cggagggtgc tgtgccatat actccacgag tagcccacac cgctcaaaga catcaccgca 6181 cacatgacat ctgtaaccat tcttatgcgt ctgcttcgaa cgcttagctt tctcggtcag 6241 tactgatgca caattcctcc ccagaccatg aatcttcact aggtgcacca cgtcaggctt 6301 tctccgcccg caaaccacgt tgaacaatcg gcaaatgatc gggttgttct gcgtggtcgc 6361 tatcccaaga tcgggtgtgt tcgcattgtc cgctgctgac tccgccacct ggtgcctctc 6421 tgctgtgtcg ctgcgtgttt cctgtgtgtc gcaccgtatg catccaagct ggtccgtctt 6481 gcgtgtgagc accctgtgaa gcgatccaaa atgcttcgag gtgcctgttc tgaactgcgc 6541 cagcaccgac tcgcccaggc ggtccagcct tgtgtgcttc ggtgcggccc gaacgtagtc 6601 gagtagcgca ctaagatgcg tacgcggcat ccgaccctcc tcgaaggcct tgtataccgc 6661 attcccgacc ttcctctcca cacacgtcac tatgtcagtg atccatgctg gatacgactg 6721 cagctttgtg tttccctgct caactgcctt ttcagcagct tcatcgcgcg gcaccccgca 6781 gtgtgagaac acgaactgga agttgacgga cacaagaagc cgcacaatac tcaagataag 6841 atcccaaatg cgtcccagaa tcgagccctc cacaacttca gggccagtgc tcagcaccat 6901 caacagcgaa attaaatccg tgagggtcac cactctcgtt ctgtgcgtct tgcttagctc 6961 catgaaatcc gctagcctct tcaaccccgc ctacatcgcc gcacattccg tgcgatagct 7021 gcatgatggc gacccaactc ccagcacaac cttctcccgc tttccctctt tcgggtacac 7081 aagggcacct gcgcctgaag agacgtccag tatcaccgac ccatccgtcc acacctggta 7141 atcatagtcc ttgaacaact gtacctgccg catggtgtgc accttcttgt ccctccccgg 7201 cgcacccgct ttgaggccgc ctggctcgtt ggtgttaaag tggacgcacg tggccatccg 7261 caacaccgtc gcatcgtgtg gattctcagg gccatcaatg gtgctttaca gacgctgtac 7321 cgtcgcaagc atgacatggg ctggatgctc aggcgggaat atgctgttcg taatttttaa 7381 ttgcgttggg cactcggctt tcaggcgtag atagcatgcc aaggctctca ggtgcgccat 7441 atcatttata aactttagcc gagcttctca cacggcatcc tcccgattgg ctgccttggg 7501 aatacccgtc attatttgtg ctgcctgtgc ctgcaccctc tctagcctct cacgatccga 7561 cagcgaggaa tcggaccacc atgaagcaat gccgtagaat atcttagccc ggaccagcac 7621 taggtagaat gctcgcagtt tctccctgtc tgggccccat tctggcgaca ccactgccct 7681 aagctgcatg agccgcgtgt ctgccgctgc cttcacgctc cttgcatgct tgctcaaacc 7741 cttgtgcggc tgcacggtaa gaccgagcag cttcggtgtg tacacttcct tcaacacagt 7801 ctctccaatc ctcaggtaaa gcaggtttgt gtcccgcgca ccgaacagtg tgtactcagc 7861 tttccccgct gaccaatttg tgacgcaact cagtccttgt tgaacggttc gctggattgc 7921 attcaggtca gagctcgtgc atactattgt gaggtcgttc gcaaagaaaa cgtgctgcaa 7981 cccagggatg cagttcagcc gcttgctcgg cgaatccacc ttgacaatga acagcagtgg 8041 accatgcacc gagccctgat gggcgccgca ggtgaggtgt atattatctg acagcatatt 8101 gctcgccccc acccgcgctg tacgaccctg cagaaagccc gcaattcacg ctaccaaatt 8161 ttttttttag aattttcttc gtgccttcgt gggagtttcc cctcactggc gcggccatca 8221 gccatcaccg tagagccctg agatgctatc ggtctggcga ctgtggcaga gtctcccttt 8281 tttattcatc ctaacactcc ctctataatt tttgttgtag ctccgcagtt gaacggaata 8341 cagcagatgg ggcgagaagc cccccacccc agactctcca aaagatgtca attagcaatc 8401 cttttgtttt gatttttgtt attcgtttat taatctctct ccctttttct gtttctgttg 8461 cttgttgact gcataccccc tctgtctcta agggtgtctg gactattcct gcgtccggtg 8521 cttttcctgc tggctccaca ctcggcaata aggggggaag ttgcagaagg gagagtgggt 8581 tgtatgactg ttaccttagg tgaggacttc acctgtggcc ggctccgttc aaccgcaatg 8641 agaaactgcg ccagcctttt agaggaacat acgtcttgca cacacacaca ccttccaccg 8701 caaacctgac acgtaactcc ttcaaaccgg gacagctcat caagtgcagc gacgtttctt 8761 cgcagtcgcc gcgttggctg gtaacagcgc gctctacctt cataccgtgc atcttctttt 8821 gatgtagggt gaggccagtt ttgctagcac actgccttcc gcatgtcggg cacaccaaca 8881 tggatgcttt tgtatgcggg gaatcagtgg cacaaaattt tgtgcttttg ctgcatttaa 8941 gctcgactcc ctcacctttg tggaaagcct tgcagtgtcg gatgagggag tccctgcaac 9001 tgagcacttt ttggcacaca ccgcactgca cctcgccctt ccccgggacg tcaacgtttc 9061 cctcacgggc acgcttacga gggaattgca ccaacaccac ggtaccgtcc tccgtcacta 9121 tgcttttatg tttgaatttc ttgtgtagtg tcagggaaga acttgtaccg aagctcgcct 9181 cgcacaggtc acattgaaac ggcagcttcc gtgtatcctg agaggctgac gctgctgggg 9241 ctctaccatc tccttgcaat gagtcctcgt tctctcgccc ccttttcacg cggcaactac 9301 cgctgcctat gccatgtatt gttctaaggt ggtgtaatag tcggcctcgc actgcgaatt 9361 tggaggcaca gagggtacaa tgaagcaact gcggtctcat cgggactcgt gtgctcgatg 9421 gtagaggaac gatcgccacc actggagggg gctccggggg gatgtccact gcaggtgttg 9481 catcgccgta tttgatcctc cggagggcat cagctcgcac aaagccatgt ttgtttacca 9541 tatgcgttac agcactcgag cggcattggt atgtggcatc acattccgta catttggtcg 9601 gttcggaggt tctctgaaga gtgcgtgtcg caacagttgg gaccgtttgt attgttggcc 9661 ctatcgctgc atgttgcggg ttgcaccatc ggcactgtgg gggcacactc gggttgatct 9721 ttcacaacat ccatccatag tgtcttgaag acccaacccg aaagcgtgcc agtgccgttt 9781 cttcttccct cgtcagttct tctttatgtt ttgttggaaa gtgtttgcac gtgataccaa 9841 acctatgagt gttctcatgg acttcttccg acctaagcac tcgcttcgca taagcaatga 9901 tgtcggggat ccatgtgtct cgcaactgtg gtaaatccgc ggcctttttg gccatttcat 9961 cgcaaacctc attccgtttc acgccacaat ggccaaacac aaattgcagt cggatacgca 10021 ccctccttct ctgaacttga agcagaagcc tccatag //