Pre_GI Gene

Host: NC_003197:1320861 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003197:1320861 Salmonella typhimurium LT2, complete genome

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
13208611321508648hypothetical proteinBLASTP
132158913226951107tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferaseQuickGO ontologyBLASTP
13227491323210462putative MutT-like proteinQuickGO ontologyBLASTP
13232221323551330putative periplasmic proteinQuickGO ontologyBLASTP
13235481324213666putative ribosomal large subunit pseudouridine synthaseQuickGO ontologyBLASTP
132438513256351251isocitrate dehydrogenaseQuickGO ontologyBLASTP
132608313272071125putative cytoplasmic proteinQuickGO ontologyBLASTP
13281891328977789putative envelope lipoproteinQuickGO ontologyBLASTP
13294661329705240macrophage survival proteinQuickGO ontologyBLASTP
13298961330417522putative envelope proteinQuickGO ontologyBLASTP
13308321331044213cold shock-like proteinQuickGO ontologyBLASTP
13311761331439264virulence protein PAGD precursorQuickGO ontologyBLASTP
13322511332808558virulence membrane protein PAGC precursorQuickGO ontologyBLASTP
13340451334389345putative periplasmic proteinQuickGO ontologyBLASTP
13350921335364273putative cytoplasmic proteinQuickGO ontologyBLASTP
13355161335983468putative molecular chaperoneQuickGO ontologyBLASTP
133632213373651044putative cytoplasmic proteinQuickGO ontologyBLASTP
13374481337978531putative inner membrane proteinQuickGO ontologyBLASTP
13381271338441315putative outer membrane lipoproteinQuickGO ontologyBLASTP
133912313407571635putative ABC transporter periplasmic binding proteinQuickGO ontologyBLASTP
13407571341731975putative ABC transporter proteinQuickGO ontologyBLASTP
13417211342533813putative ABC transporter proteinQuickGO ontologyBLASTP
13425271343324798putative ABC-type transport system ATPase componentQuickGO ontologyBLASTP
13433181343908591putative ABC-type transport system ATPase componentQuickGO ontologyBLASTP
134399013451231134putative inner membrane proteinQuickGO ontologyBLASTP
13453171345643327putative cytoplasmic proteinQuickGO ontologyBLASTP
13458401346487648putative periplasmic proteinQuickGO ontologyBLASTP
13465961347384789aminoglycoside adenyltransferaseQuickGO ontologyBLASTP