Pre_GI Gene

Host: NC_003197:1945858 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003197:1945858 Salmonella typhimurium LT2, complete genome

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
194461219458951284putative inner membrane proteinQuickGO ontologyBLASTP
194585819484972640putative inner membrane proteinQuickGO ontologyBLASTP
194857519500141440putative rRNA methyltransferaseQuickGO ontologyBLASTP
19501291950368240putative cytoplasmic proteinQuickGO ontologyBLASTP
19504791950670192putative inner membrane lipoproteinQuickGO ontologyBLASTP
19506891951339651serinethreonine protein phosphataseQuickGO ontologyBLASTP
19515631951727165putative inner membrane proteinQuickGO ontologyBLASTP
19520121952734723type III-secreted effector proteinQuickGO ontologyBLASTP
19534181953813396putative cytoplasmic proteinQuickGO ontologyBLASTP
19541431954619477hypothetical proteinBLASTP
19550071955426420putative acetyltransferaseQuickGO ontologyBLASTP
19557961956065270putative cytoplasmic proteinQuickGO ontologyBLASTP
19561981956371174putative cytoplasmic proteinQuickGO ontologyBLASTP
19578351958203369BLASTP
19595071960421915integral membrane proteinQuickGO ontologyBLASTP
19605541960712159putative inner membrane proteinQuickGO ontologyBLASTP
19607221961336615putative inner membrane proteinQuickGO ontologyBLASTP
19631791963379201PagKQuickGO ontologyBLASTP
19634761964357882phage-tail assembly-like proteinQuickGO ontologyBLASTP
19645121964775264hypothetical proteinBLASTP
19650831965250168lytic enzymeQuickGO ontologyBLASTP
19655071966040534phage-tail assembly-like proteinQuickGO ontologyBLASTP
19660941966381288hypothetical proteinBLASTP
19665141967008495RecE-like proteinQuickGO ontologyBLASTP
19670261967922897BLASTP
19681191968238120putative cytoplasmic proteinQuickGO ontologyBLASTP
19682961968649354hypothetical proteinBLASTP
19686661969541876putative inner membrane proteinQuickGO ontologyBLASTP
19695421969916375putative copper resistance proteinQuickGO ontologyBLASTP
19700541970284231DNA polymerase III theta subunitQuickGO ontologyBLASTP
19703921971048657putative amidohydrolaseQuickGO ontologyBLASTP
19710721971770699exodeoxyribonuclease XQuickGO ontologyBLASTP
197180519738562052protease IIQuickGO ontologyBLASTP
19740691974728660putative inner membrane proteinQuickGO ontologyBLASTP