Pre_GI Gene

Host: NC_003197:2894344 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003197:2894344 Salmonella typhimurium LT2, complete genome

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
28943442894907564putative sugar phosphate aminotransferaseQuickGO ontologyBLASTP
28949072895749843putative cytoplasmic proteinQuickGO ontologyBLASTP
289587928974201542putative phosphotransferase system IIC componentQuickGO ontologyBLASTP
289764328993221680putative dipeptideoligopeptidenickel ABC-type transport system periplasmic componentQuickGO ontologyBLASTP
29004392901314876putative integraseQuickGO ontologyBLASTP
290148029033541875putative inner membrane proteinQuickGO ontologyBLASTP
290361429048971284putative inner membrane proteinQuickGO ontologyBLASTP
29070662907332267putative transposaseQuickGO ontologyBLASTP
29077852908423639putative cytoplasmic proteinQuickGO ontologyBLASTP
290842029104021983putative DNARNA helicaseQuickGO ontologyBLASTP
29106812910980300putative transposaseQuickGO ontologyBLASTP
29109772911843867putative transposaseQuickGO ontologyBLASTP
29126232913162540phase-1 flagellin repressorQuickGO ontologyBLASTP
291323029147501521flagellar biosynthesis proteinQuickGO ontologyBLASTP
29148422915414573DNA-invertase HinQuickGO ontologyBLASTP
291637729174921116putative glycosyl transferaseQuickGO ontologyBLASTP
291757329212263654putative ABC transporter proteinQuickGO ontologyBLASTP
292133629225801245enterochelin esterase-like proteinQuickGO ontologyBLASTP
29226122923547936putative hydrolaseQuickGO ontologyBLASTP
292358929257692181TonB-dependent siderophore receptor proteinQuickGO ontologyBLASTP
292680229278541053secreted effector proteinQuickGO ontologyBLASTP
29283732929302930virulence proteinQuickGO ontologyBLASTP
29295952930491897putative transcriptional activatorQuickGO ontologyBLASTP
293121329322261014putative nickel transporterQuickGO ontologyBLASTP
293235929337741416regulatory proteinQuickGO ontologyBLASTP
29337612934435675regulatory proteinQuickGO ontologyBLASTP
29345902935567978tricarboxylic transportQuickGO ontologyBLASTP
29355792936013435tricarboxylic transportQuickGO ontologyBLASTP
293602429375381515tricarboxylic transportQuickGO ontologyBLASTP
29378322938818987hypothetical proteinBLASTP
293884429401121269putative sarcosine oxidase-like proteinQuickGO ontologyBLASTP
294013429415821449succinate-semialdehyde dehydrogenase IQuickGO ontologyBLASTP
2941597294288012844-aminobutyrate aminotransferaseQuickGO ontologyBLASTP