Pre_GI Gene

Host: NC_003197:3005842 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003197:3005842 Salmonella typhimurium LT2, complete genome

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
30058423006186345putative cytoplasmic proteinQuickGO ontologyBLASTP
30063683007285918putative periplasmic binding proteinQuickGO ontologyBLASTP
30072823008103822putative ATP-binding proteinQuickGO ontologyBLASTP
30081003008960861putative permeaseQuickGO ontologyBLASTP
30089513009799849putative permeaseQuickGO ontologyBLASTP
30098983010806909secreted effector proteinQuickGO ontologyBLASTP
30109673011722756transcriptional regulatorQuickGO ontologyBLASTP
30121073012994888invasion regulatory proteinQuickGO ontologyBLASTP
30133393013791453putative cytoplasmic proteinQuickGO ontologyBLASTP
30137883014468681needle complex export proteinQuickGO ontologyBLASTP
30144253015024600needle complex assembly proteinQuickGO ontologyBLASTP
30149963015754759needle complex inner membrane lipoproteinQuickGO ontologyBLASTP
30157513016056306needle complex minor subunitQuickGO ontologyBLASTP
30160753016317243needle complex major subunitQuickGO ontologyBLASTP
301634230175201179needle complex inner membrane proteinQuickGO ontologyBLASTP
30178363018765930invasion protein regulatory proteinQuickGO ontologyBLASTP
301985630215171662invasion protein transcriptional activatorQuickGO ontologyBLASTP
30215353022017483invasion protein precursorQuickGO ontologyBLASTP
302207130237021632protein tyrosine phosphataseGTPase activating proteinQuickGO ontologyBLASTP
30236893024081393secretion chaparoneQuickGO ontologyBLASTP
30244123024660249acyl carrier proteinQuickGO ontologyBLASTP
302467930267362058secreted effector proteinQuickGO ontologyBLASTP
302675530277861032translocation machinery componentQuickGO ontologyBLASTP
302785730290861230translocation machinery componentQuickGO ontologyBLASTP
302911430308951782translocation machinery componentQuickGO ontologyBLASTP
30308983031395498secretion chaperoneQuickGO ontologyBLASTP
303153330326031071type III secretion proteinQuickGO ontologyBLASTP
30325903033381792needle complex export proteinQuickGO ontologyBLASTP
30333853033645261needle complex export proteinQuickGO ontologyBLASTP
30336713034345675needle complex export proteinQuickGO ontologyBLASTP
30343353035246912type III secretion proteinQuickGO ontologyBLASTP
303524630362561011needle length control proteinQuickGO ontologyBLASTP
30362563036699444needle complex assembly proteinQuickGO ontologyBLASTP
303667730379721296type III secretion system ATPaseQuickGO ontologyBLASTP
30379693038376408secretion chaperoneQuickGO ontologyBLASTP
303840030404572058needle complex export proteinQuickGO ontologyBLASTP
304048230416001119invasion proteinQuickGO ontologyBLASTP
304159730432851689outer membrane secretin precursorQuickGO ontologyBLASTP
30432823043932651invasion regulatory proteinQuickGO ontologyBLASTP
30443893044832444needle complex outer membrane lipoprotein precursorQuickGO ontologyBLASTP
30452633045712450putative cytoplasmic proteinQuickGO ontologyBLASTP
30456973046044348putative cytoplasmic proteinQuickGO ontologyBLASTP
30463173046643327putative cytoplasmic proteinQuickGO ontologyBLASTP
30473323047622291putative ABC-type transporterQuickGO ontologyBLASTP
30476193048146528putative acetyltransferaseQuickGO ontologyBLASTP
30487713049427657serinethreonine protein phosphatase 2QuickGO ontologyBLASTP
30495993050120522putative cytoplasmic proteinQuickGO ontologyBLASTP
305027930528462568DNA mismatch repair proteinQuickGO ontologyBLASTP
30529023053282381putative cytoplasmic proteinQuickGO ontologyBLASTP
305327930544871209putative permeaseQuickGO ontologyBLASTP
30545753055507933putative transcriptional regulatorQuickGO ontologyBLASTP
305554930570451497putative permeaseQuickGO ontologyBLASTP
30570423057992951putative nucleoside-diphosphate-sugar epimeraseQuickGO ontologyBLASTP
30580323058808777putative endonucleaseQuickGO ontologyBLASTP
30588133059451639hypothetical proteinBLASTP
305944830607101263putative tRNA synthaseQuickGO ontologyBLASTP
306070430616279243-hydroxyisobutyrate dehydrogenaseQuickGO ontologyBLASTP