Pre_GI Gene

Host: NC_003198:2856596 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003198:2856596 Salmonella enterica subsp. enterica serovar Typhi str. CT18,

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
285659628586742079transcriptional activator of the formate hydrogenlyase systemQuickGO ontologyBLASTP
28587362859080345hypothetical proteinBLASTP
28592622860179918Iron transport protein periplasmic-binding proteinQuickGO ontologyBLASTP
28601762860997822Iron transport protein ATP-binding componentQuickGO ontologyBLASTP
28609942861854861Iron transport protein inner membrane componentQuickGO ontologyBLASTP
28618452862693849Iron transport protein inner membrane componentQuickGO ontologyBLASTP
28626652862874210hypothetical proteinBLASTP
28629702863725756possible AraC-family transcriptional regulatorQuickGO ontologyBLASTP
28641102864997888possible AraC-family transcriptional regulatorQuickGO ontologyBLASTP
28653432865795453hypothetical protein found within S typhi pathogenicity island 1QuickGO ontologyBLASTP
28658112866482672cell invasion proteinQuickGO ontologyBLASTP
28664392867017579cell invasion proteinQuickGO ontologyBLASTP
28670102867768759pathogenicity 1 island effector proteinQuickGO ontologyBLASTP
28677652868070306pathogenicity 1 island effector proteinQuickGO ontologyBLASTP
28680892868331243pathogenicity 1 island effector proteinQuickGO ontologyBLASTP
286835628695341179pathogenicity 1 island effector proteinQuickGO ontologyBLASTP
28698502870779930AraC-family transcriptional regulatorQuickGO ontologyBLASTP
287186628735271662invasion protein regulatorQuickGO ontologyBLASTP
28735452874027483cell invasion proteinQuickGO ontologyBLASTP
287408128757121632tyrosine phosphatase associated with virulenceQuickGO ontologyBLASTP
28756992876049351chaperone associated with virulenceQuickGO ontologyBLASTP
28761182876378261doubtful CDS found within S typhi pathogenicity islandQuickGO ontologyBLASTP
28764222876670249acyl carrier proteinQuickGO ontologyBLASTP
287668928787462058pathogenicity island 1 effector protein function unknownQuickGO ontologyBLASTP
287876528797871023pathogenicity island 1 effector proteinQuickGO ontologyBLASTP
287985728810861230pathogenicity island 1 effector proteinQuickGO ontologyBLASTP
288111428828951782pathogenicity island 1 effector proteinQuickGO ontologyBLASTP
28828982883395498unknown functionQuickGO ontologyBLASTP
288353328846031071type III secretion proteinQuickGO ontologyBLASTP
28845902885381792secretory protein associated with virulenceQuickGO ontologyBLASTP
28853852885645261secretory protein associated with virulenceQuickGO ontologyBLASTP
28856712886345675secretory protein associated with virulenceQuickGO ontologyBLASTP
28863352887246912type III secretion proteinQuickGO ontologyBLASTP
288724628882561011surface presentation of antigens protein associated with type III secretion and virulenceQuickGO ontologyBLASTP
28882562888699444secretory protein associated with virulenceQuickGO ontologyBLASTP
288867728899721296type III secretion system ATPaseQuickGO ontologyBLASTP
28899692890376408secretory protein associated with virulenceQuickGO ontologyBLASTP
289040028924572058possible secretory protein associated with virulenceQuickGO ontologyBLASTP
289248228936001119cell invasion proteinQuickGO ontologyBLASTP
289359728952851689secretory protein associated with virulenceQuickGO ontologyBLASTP
28952822895932651possible AraC-family regulatory proteinQuickGO ontologyBLASTP
28963882896831444cell adheranceinvasion proteinQuickGO ontologyBLASTP
28972262897440215BLASTP
28977052897995291hypothetical proteinBLASTP
28979922898519528hypothetical proteinBLASTP
28985922899034443BLASTP
28992402899896657possible serinethreonine protein phosphataseQuickGO ontologyBLASTP
29000662900251186hypothetical proteinBLASTP
29002602900586327hypothetical proteinBLASTP
290074429033112568DNA mismatch repair proteinQuickGO ontologyBLASTP
29033672903663297hypothetical proteinBLASTP
290374629049541209possible membrane transport proteinQuickGO ontologyBLASTP
29050422905974933possible LysR-family transcriptional regulatorQuickGO ontologyBLASTP