Pre_GI Gene

Host: NC_003366:2143173 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003366:2143173 Clostridium perfringens str. 13, complete genome

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a type A isolate from the soil. It can establish gas gangrene in a murine experimental model. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
214317321449001728probable phosphomannomutaseQuickGO ontologyBLASTP
21450562145667612probable general stress proteinQuickGO ontologyBLASTP
214580121502404440hypothetical proteinBLASTP
215041821526702253hypothetical proteinBLASTP
21528942153610717probable glycerophosphodiester phosphodiesteraseQuickGO ontologyBLASTP
215361421546361023probable glycolate oxidaseQuickGO ontologyBLASTP
21546502155093444hypothetical proteinBLASTP
215533121575142184stage V sporulation protein DQuickGO ontologyBLASTP
215777721601372361recombination and DNA strand exchange inhibitor proteinQuickGO ontologyBLASTP
216015121625112361probable collagenaseQuickGO ontologyBLASTP
21629012163689789hypothetical proteinBLASTP
216377621651311356hypothetical proteinBLASTP