Pre_GI Gene

Host: NC_004129:2201780 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004129:2201780 Pseudomonas fluorescens Pf-5, complete genome

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
22017802202466687vacJ lipoproteinQuickGO ontologyBLASTP
22025322202831300hypothetical proteinBLASTP
220310822042921185response regulatorQuickGO ontologyBLASTP
22042892204771483anti-sigma factor antagonistQuickGO ontologyBLASTP
22048452205771927transaldolaseQuickGO ontologyBLASTP
220594922069591011TIM-barrel protein yjbN familyQuickGO ontologyBLASTP
220706022082021143site-specific recombinase phage integrase familyQuickGO ontologyBLASTP
22084492208922474hypothetical protein
220944622111791734hypothetical proteinBLASTP
22111692211507339hypothetical proteinBLASTP
22115072211728222hypothetical proteinBLASTP
22117252212144420hypothetical proteinBLASTP
22121892212515327transcriptional regulator prtNQuickGO ontologyBLASTP
22126742212958285hypothetical proteinBLASTP
22129682213552585hypothetical proteinBLASTP
22136272213758132hypothetical protein
22138092214522714peptidase S24-like domainQuickGO ontologyBLASTP
22152052215369165hypothetical protein
22154002215738339hypothetical proteinBLASTP
221593022181672238DNA primase domain proteinQuickGO ontologyBLASTP
22181812218525345hypothetical proteinBLASTP
22190462219390345pyocin R2_PP holinQuickGO ontologyBLASTP
22195962220168573hypothetical proteinBLASTP
222013422221852052terminase large subunitQuickGO ontologyBLASTP
22221872222393207hypothetical proteinBLASTP
222239322238741482portal protein lambda familyQuickGO ontologyBLASTP
222387122250131143ATP-dependent Clp protease proteolytic subunit ClpPQuickGO ontologyBLASTP
22250102225354345hypothetical proteinBLASTP