Pre_GI Gene

Host: NC_004337:3049118 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004337:3049118 Shigella flexneri 2a str. 301, complete genome

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
304911830513132196ornithine decarboxylase isozymeQuickGO ontologyBLASTP
30516513052358708putative transport proteinQuickGO ontologyBLASTP
3052464305253976tRNA-PheQuickGO ontologyBLASTP
305273730539991263putative P4-type integraseQuickGO ontologyBLASTP
305445230579673516putative superfamily I DNA helicaseQuickGO ontologyBLASTP
30583073058672366hypothetical proteinBLASTP
30593163060077762hypothetical proteinBLASTP
306043830642953858serine proteaseQuickGO ontologyBLASTP
30642253064923699hypothetical proteinBLASTP
30653263065673348hypothetical proteinBLASTP
30657993066305507hypothetical proteinBLASTP
30663923067306915hypothetical proteinBLASTP
306773830709503213serine protease precurserQuickGO ontologyBLASTP
30695563069741186Shet1BQuickGO ontologyBLASTP
30697453070278534Shet1AQuickGO ontologyBLASTP
30720213072407387IS629 ORF2QuickGO ontologyBLASTP
307258430740921509reverse transcriptase-like proteinQuickGO ontologyBLASTP
30740613074486426hypothetical proteinBLASTP
30745213074772252hypothetical proteinBLASTP
30748213075177357IS629 ORF2QuickGO ontologyBLASTP
30751743075500327IS629 ORF1QuickGO ontologyBLASTP
30757833076208426hypothetical proteinBLASTP
30762053076588384hypothetical proteinBLASTP
30769613077560600hypothetical proteinBLASTP
307771830789261209iso-IS10R ORFQuickGO ontologyBLASTP
30795703079980411insertion sequence 2 OrfA proteinQuickGO ontologyBLASTP
30800563080844789insertion sequence 2 OrfB proteinQuickGO ontologyBLASTP
30815313082322792hypothetical proteinBLASTP
30827083082914207hypothetical proteinBLASTP
30830003083572573hypothetical proteinBLASTP
308514130861601020hypothetical proteinBLASTP
30862703087142873hypothetical proteinBLASTP
308747030905983129outer membrane fluffing proteinQuickGO ontologyBLASTP
309071930932352517hypothetical proteinBLASTP
30933113093766456hypothetical proteinBLASTP
30941773094995819hypothetical proteinBLASTP
30953373095810474hypothetical proteinBLASTP
30958113096302492putative RADC family DNA repair proteinQuickGO ontologyBLASTP
30963893096610222hypothetical proteinBLASTP
30966903097067378putative structural proteinQuickGO ontologyBLASTP
30971143097491378hypothetical proteinBLASTP
30974883097976489hypothetical proteinBLASTP
30979963098193198hypothetical proteinBLASTP
30982783099120843hypothetical proteinBLASTP
309972331009311209iso-IS10R ORFQuickGO ontologyBLASTP
31011903101480291hypothetical proteinBLASTP
31018743102182309IS3 ORF1QuickGO ontologyBLASTP
31021793103045867IS3 ORF2QuickGO ontologyBLASTP
31031493103616468hypothetical proteinBLASTP
31036823103921240hypothetical proteinBLASTP
31040563104661606hypothetical proteinBLASTP
31047763105069294IS1 ORF2QuickGO ontologyBLASTP
31051993105474276IS1 ORF1QuickGO ontologyBLASTP
31055453105838294IS1 ORF2QuickGO ontologyBLASTP
31059683106243276IS1 ORF1QuickGO ontologyBLASTP
310770031090971398putative permeaseQuickGO ontologyBLASTP
310964331118142172malate synthaseQuickGO ontologyBLASTP
31118363112240405hypothetical proteinBLASTP