Pre_GI Gene

Host: NC_004547:164000 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004547:164000 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
164389164985597nucleoid occlusion proteinQuickGO ontologyBLASTP
165111165569459deoxyuridine 5-triphosphate nucleotidohydrolaseQuickGO ontologyBLASTP
1655471668241278phosphopantothenoylcysteine synthasedecarboxylaseQuickGO ontologyBLASTP
166978167643666DNA repair protein RadCQuickGO ontologyBLASTP
16788116811723750S ribosomal protein L28QuickGO ontologyBLASTP
16812916829616850S ribosomal protein L33QuickGO ontologyBLASTP
168516169325810formamidopyrimidine-DNA glycosylaseQuickGO ontologyBLASTP
169392170366975putative sugar transferaseQuickGO ontologyBLASTP
170375170854480phosphopantetheine adenylyltransferaseQuickGO ontologyBLASTP
17089117216812783-deoxy-D-manno-octulosonic-acid transferaseQuickGO ontologyBLASTP
172396173259864putative glycosyltransferaseQuickGO ontologyBLASTP
173307174074768lipopolysaccharide core biosynthesis glycosyl transferaseQuickGO ontologyBLASTP
174161174907747putative beta14-galactosyltransferaseQuickGO ontologyBLASTP
174978175163186hypothetical protein
175283176065783hypothetical proteinBLASTP
1762141772301017lipopolysaccharide 12-glucosyltransferaseQuickGO ontologyBLASTP
1772841782941011lipopolysaccharide 13-galactosyltransferaseQuickGO ontologyBLASTP
1783611794791119lipopolysaccharide core biosynthesis proteinQuickGO ontologyBLASTP
1794761805461071lipopolysaccharide core biosynthesis glycosyl transferase rfaqQuickGO ontologyBLASTP
1805431817691227O-antigen ligaseQuickGO ontologyBLASTP
1822611835441284O-antigen ligaseQuickGO ontologyBLASTP
183541184524984lipopolysaccharide heptosyltransferase-1QuickGO ontologyBLASTP
1845211855881068ADP-heptose--LPS heptosyltransferase IIQuickGO ontologyBLASTP
185612186544933ADP-L-glycero-D-manno-heptose-6-epimeraseQuickGO ontologyBLASTP
18678618798211972-amino-3-ketobutyrate coenzyme A ligaseQuickGO ontologyBLASTP
1879931890781086L-threonine 3-dehydrogenaseQuickGO ontologyBLASTP
189183190130948hypothetical proteinBLASTP
1901331914341302putative exported peptidaseQuickGO ontologyBLASTP