Pre_GI Gene

Host: NC_004547:1873390 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004547:1873390 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
18733901874118729putative conjugal transfer proteinQuickGO ontologyBLASTP
187414218768892748putative conjugal transfer proteinQuickGO ontologyBLASTP
18769011877179279putative conjugal transfer proteinQuickGO ontologyBLASTP
18771791877826648putative conjugal transfer proteinQuickGO ontologyBLASTP
18779041878182279hypothetical proteinBLASTP
187881918801141296hypothetical plasmid proteinQuickGO ontologyBLASTP
18802181880427210putative conjugal transfer proteinQuickGO ontologyBLASTP
18804171881001585hypothetical proteinBLASTP
18810181881212195putative prophage regulatory proteinQuickGO ontologyBLASTP
18814821882006525hypothetical proteinBLASTP
18830051883862858AraC-family transcriptional regulatorQuickGO ontologyBLASTP
188684518885331689hypothetical protein
18888101889685876hypothetical proteinBLASTP
18900041890399396hypothetical proteinBLASTP
18904771890773297hypothetical proteinBLASTP
18908231891059237hypothetical proteinBLASTP
18910861891436351hypothetical proteinBLASTP
18915051891747243Hns-like DNA-binding proteinQuickGO ontologyBLASTP
189196518932391275hypothetical proteinBLASTP
18933331893812480hypothetical proteinBLASTP
18939001894037138hypothetical protein
18942721894526255hypothetical protein
18948371895358522hypothetical proteinBLASTP
18953841896118735putative DNA-binding proteinQuickGO ontologyBLASTP
18977211898485765hypothetical proteinBLASTP
18984921899034543hypothetical proteinBLASTP
18993381900024687hypothetical proteinBLASTP
19000981900667570hypothetical protein
19009591901330372hypothetical protein
19013961901848453hypothetical protein
19019131902167255hypothetical protein
19022481903087840transposaseQuickGO ontologyBLASTP
19030901903356267transposaseQuickGO ontologyBLASTP
19035821903959378hypothetical proteinBLASTP
19045921905143552putative lipoproteinQuickGO ontologyBLASTP
19051541905429276hypothetical proteinBLASTP
190555119073951845hypothetical proteinBLASTP
19081041909087984hypothetical proteinBLASTP
190927119107311461probable plasmid-related proteinQuickGO ontologyBLASTP
19114081912160753hypothetical protein
19123801913045666hypothetical proteinBLASTP
19136121913905294hypothetical proteinBLASTP
19139341914218285hypothetical proteinBLASTP
19143241914683360putative lipoproteinQuickGO ontologyBLASTP
19147631915161399DNA-binding protein HnsQuickGO ontologyBLASTP
19152621915492231hypothetical protein
19157241916281558putative type IV pilin protein precursorQuickGO ontologyBLASTP
191638819179801593putative type IV prepilinQuickGO ontologyBLASTP
191814319198851743hypothetical proteinBLASTP
19198821920076195hypothetical proteinBLASTP
19204921920980489hypothetical protein
19216481921920273hypothetical proteinBLASTP
19225291922717189hypothetical protein
19227431922949207hypothetical proteinBLASTP
19230481923206159integrase partialQuickGO ontologyBLASTP
19232121923496285hypothetical proteinBLASTP
19236401923981342putative integrase partialQuickGO ontologyBLASTP
19239571924289333putative growth inhibitory proteinQuickGO ontologyBLASTP
19242891924540252suppressor of growth inhibitory protein ChpAQuickGO ontologyBLASTP
19251541925486333hypothetical protein
192568219269591278phage integraseQuickGO ontologyBLASTP
1927139192721476tRNA-AsnQuickGO ontologyBLASTP
19273251928122798hypothetical proteinBLASTP
192867919300071329hypothetical proteinBLASTP
19303011930504204hypothetical proteinBLASTP
193057319322941722methyl-accepting chemotaxis proteinQuickGO ontologyBLASTP
19325751933540966hypothetical proteinBLASTP
19343611934720360transcriptional activator FlhDQuickGO ontologyBLASTP
19347241935302579flagellar transcriptional activatorQuickGO ontologyBLASTP
19354371936324888flagellar motor proteinQuickGO ontologyBLASTP
193632119373761056flagellar motor proteinQuickGO ontologyBLASTP