Pre_GI Gene

Host: NC_004603:1897532 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004603:1897532 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
189753218990161485hypothetical proteinBLASTP
18991081899608501hypothetical protein
18999111900192282hypothetical proteinBLASTP
1900170190025990hypothetical protein
19004721900744273hypothetical proteinBLASTP
19008851901736852putative transposaseQuickGO ontologyBLASTP
19017511902035285putative transposaseQuickGO ontologyBLASTP
19022661902760495hypothetical proteinBLASTP
19029731903377405hypothetical proteinBLASTP
19035261904041516hypothetical protein
19042071904644438hypothetical proteinBLASTP
19052231905438216hypothetical proteinBLASTP
19056411906186546hypothetical proteinBLASTP
1906226190631893hypothetical proteinBLASTP
19063331907178846hypothetical protein
19073081907679372hypothetical proteinBLASTP
19078171908176360hypothetical proteinBLASTP
19090321909142111hypothetical protein
19094041909598195hypothetical proteinBLASTP
19098351910305471hypothetical protein
191052419120741551hypothetical proteinBLASTP
1912730191282293hypothetical proteinBLASTP
19128501913242393hypothetical proteinBLASTP
19133711914159789hypothetical proteinBLASTP
19150161915201186hypothetical protein
19152511915658408hypothetical proteinBLASTP
19158201916500681hypothetical proteinBLASTP
19167231916911189hypothetical proteinBLASTP
19170231917301279hypothetical proteinBLASTP
19173281917477150hypothetical proteinBLASTP
191768819187551068hypothetical proteinBLASTP
19188811919270390hypothetical protein
19193901919920531hypothetical protein
19200831920511429hypothetical protein
19207351921151417putative Hit protein involved in cell-cycle regulationQuickGO ontologyBLASTP
19212891921786498hypothetical protein
19220251922183159hypothetical protein
19224301922876447hypothetical protein
19229751923247273hypothetical proteinBLASTP
19232371923536300putative YefM proteinQuickGO ontologyBLASTP
1923594192368693hypothetical proteinBLASTP
192371019248791170hypothetical proteinBLASTP
19249501925600651hypothetical proteinBLASTP
19256961926466771putative CBS domain containing proteinQuickGO ontologyBLASTP
19265371927358822hypothetical proteinBLASTP
19275021928050549putative sperminespermidine acetyltransferase BltDQuickGO ontology
19281981928575378putative PnuC proteinQuickGO ontology
19286661928950285RelB proteinVco27A proteinQuickGO ontologyBLASTP
19289471929225279hypothetical proteinBLASTP
19293721929656285hypothetical proteinBLASTP
19298201930296477hypothetical proteinBLASTP
19303241930425102hypothetical protein
19304411930683243hypothetical proteinBLASTP
19315621931954393hypothetical protein
1932612193270493hypothetical protein
1932826193292196hypothetical protein
1933192193328493hypothetical proteinBLASTP
19333121933839528hypothetical proteinBLASTP
19339661934565600hypothetical proteinBLASTP
19346811935319639hypothetical protein
19354471935800354RelB proteinQuickGO ontologyBLASTP
19357971936075279hypothetical proteinBLASTP