Pre_GI Gene

Host: NC_004603:230000 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004603:230000 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
230277230843567hypothetical proteinBLASTP
2309122335812670OtnA proteinQuickGO ontologyBLASTP
233872234864993OtnB proteinQuickGO ontologyBLASTP
2350482361361089dTDP-D-glucose 46-dehydrataseQuickGO ontologyBLASTP
236136237011876D-glucose-1-phosphate thymidylyltransferaseQuickGO ontologyBLASTP
237008237880873putative dTDP-4-dehydrorhamnose reductaseQuickGO ontologyBLASTP
2378642390421179putative capsular polysaccharide biosynthesis protein CapFQuickGO ontology
239039239860822putative rhamnosyl transferaseQuickGO ontologyBLASTP
2398572410141158hypothetical proteinBLASTP
2410162422451230putative integral membrane proteinQuickGO ontology
242226242789564dTDP-4-dehydrorhamnose 35-epimeraseQuickGO ontologyBLASTP
2427932440311239putative glycosyltransferaseQuickGO ontologyBLASTP
244012244614603putative UDP-galactose phosphate transferaseQuickGO ontologyBLASTP
244604245569966hypothetical proteinBLASTP
245556246218663hypothetical proteinBLASTP
2462122473871176pilin glycosylation proteinQuickGO ontologyBLASTP
2475552495041950putative epimerasedehydrataseQuickGO ontologyBLASTP
2496622508281167nucleotide sugar dehydrogenaseQuickGO ontologyBLASTP
250898251776879UTP-glucose-1-phosphate uridylyltransferaseQuickGO ontologyBLASTP
2519302532791350hypothetical proteinBLASTP
253572254342771triosephosphate isomeraseQuickGO ontologyBLASTP
254613254960348putative 5-carboxymethyl-2-hydroxymuconate delta isomeraseQuickGO ontologyBLASTP
255059255481423hypothetical proteinBLASTP
255522255860339hypothetical protein
255983256597615hypothetical proteinBLASTP