Pre_GI Gene

Host: NC_007356:51080 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_007356:51080 Dehalococcoides sp. CBDB1, complete genome

Host Lineage: Dehalococcoides mccartyi; Dehalococcoides; Dehalococcoidaceae; Dehalococcoidales; Chloroflexi; Bacteria

General Information: This strain was isolated from an enriched chlorobenzene-dechlorinatng mixed culture from anoxic river sediment. This organism was isolated from environments contaminated with organic chlorinated chemicals such as tetrachloroethene (PCE) and trichloroethane (TCE), common contaminants in the anaerobic subsurface. There are at least 15 organisms from different metabolic groups, halorespirators, acetogens, methanogens and facultative anaerobes, that are able to metabolize PCE. Some of these organisms couple dehalogenation to energy conservation and utilize PCE as the only source of energy while others dehalogenate tetrachloroethene fortuitously. This non-methanogenic, non-acetogenic culture is able to grow with hydrogen as the electron donor, indicating that hydrogen/PCE serves as an electron donor/acceptor for energy conservation and growth. This organism can only grow anaerobically in the presence of hydrogen as an electron donor and chlorinated compounds as electron acceptors. Dehalococcoides ethenogenes is typically found at sites contaminated with chlorinated solvents, and have been independently isolated in dozens of sites across the USA.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
51080535542475ATP-dependent Clp protease ATP-binding subunitQuickGO ontologyBLASTP
53999553931395DNA repair protein RadAQuickGO ontologyBLASTP
55380560636842-C-methyl-D-erythritol 4-phosphatecytidylyltransferaseQuickGO ontologyBLASTP
56069565424742-C-methyl-D-erythritol 24-cyclodiphosphate synthaseQuickGO ontologyBLASTP
56546579191374cysteinyl-tRNA synthetaseQuickGO ontologyBLASTP
5801358810798putative recombinase proteinQuickGO ontologyBLASTP
580255810076tRNA-AlaQuickGO ontologyBLASTP
5896059667708DNA-binding response regulatorQuickGO ontologyBLASTP
59661613281668sensor histidine kinaseQuickGO ontologyBLASTP
61449629391491putative reductive dehalogenaseQuickGO ontologyBLASTP
6297763279303putative reductive dehalogenase anchoring proteinQuickGO ontologyBLASTP
6410864872765hypothetical proteinBLASTP
65088665931506sensor histidine kinaseQuickGO ontologyBLASTP
6658067281702DNA-binding response regulatorQuickGO ontologyBLASTP
67523689891467putative reductive dehalogenaseQuickGO ontologyBLASTP
6901069282273putative reductive dehalogenase anchoring proteinQuickGO ontologyBLASTP
7019971053855hypothetical protein
7132872092765hypothetical proteinBLASTP
7217972475297putative reductive dehalogenase anchoring proteinQuickGO ontologyBLASTP
72513740601548putative reductive dehalogenaseQuickGO ontologyBLASTP
7417175037867hypothetical proteinBLASTP
7534976032684DNA-binding response regulatoQuickGO ontologyBLASTP
76013772391227sensor histidine kinaseQuickGO ontologyBLASTP
77336788201485radical SAMB12 binding domain proteinQuickGO ontologyBLASTP
7884379592750radical SAM domain proteinQuickGO ontologyBLASTP
7958980335747hypothetical proteinBLASTP
8041980688270putative reductive dehalogenase anchoring proteinQuickGO ontologyBLASTP
80710822301521putative reductive dehalogenaseQuickGO ontologyBLASTP
8230582928624hypothetical proteinBLASTP
8299583891897sensor histidin kinase fragment PAS domainQuickGO ontologyBLASTP
8390884186279sensor histidin kinase fragment ATP binding domainQuickGO ontologyBLASTP
8418684872687DNA-binding response regulator LuxR familyQuickGO ontologyBLASTP
8524285613372hypothetical proteinBLASTP
8561086506897hypothetical proteinBLASTP
86503888872385hypothetical proteinBLASTP
89251904051155hypothetical protein
9054190774234hypothetical proteinBLASTP
90777927141938putative type I restriction-modification system methylation subunitQuickGO ontologyBLASTP
9270193369669putative type I restriction enzyme specificity proteinQuickGO ontologyBLASTP
93366963502985restriction enzyme type I helicase subunitQuickGO ontologyBLASTP
9634797090744putative zinc proteaseQuickGO ontologyBLASTP
971841002853102putative helicase Snf2 familyQuickGO ontologyBLASTP