Pre_GI Gene

Host: NC_008146:1748026 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008146:1748026 Mycobacterium sp. MCS, complete genome

Host Lineage: Mycobacterium; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Mycobacterium MCS was isolated from soil in a wood preservative-contaminated land-treatment unit where remediation of polycyclic aromatic hydrocarbon (PAH) was occurring. This isolate mineralizes small- and large-ring PAHs, in contrast to other PAH-degrading microbes. Bioremediation of PAHs offers an attractive solution to pollution clean-up because it can occur on site and at relative little cost compared to alternatives. This isolate belongs to a fast-growing group of the mycobacterium genus that is defined as Gram-positive, acid-fast, pleomorphic, non-motile rods. Bioremediation of soils contaminated with wood preservatives containing polycyclic aromatic hydrocarbons (PAHs) is desired because of their toxic, mutagenic, and carcinogenic properties. Creosote wood preservative–contaminated soils at the Champion International Superfund Site in Libby, Montana currently undergo bioremediation in a prepared-bed land treatment unit (LTU) process.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
17480261748919894protein of unknown function DUF214QuickGO ontologyBLASTP
17489231749429507SsrA-binding proteinQuickGO ontologyBLASTP
17495221750271750protein of unknown function DUF6 transmembraneQuickGO ontologyBLASTP
175032917526742346diguanylate cyclasephosphodiesteraseQuickGO ontologyBLASTP
17532261754176951hypothetical proteinBLASTP
17545621754942381hypothetical proteinBLASTP
17550151755452438PAS fold-3QuickGO ontologyBLASTP
17556331756124492two component transcriptional regulator LuxR familyQuickGO ontologyBLASTP
17570801757583504hypothetical proteinBLASTP
17575801758473894transcriptional regulator IclR familyQuickGO ontologyBLASTP
175894117603951455ring hydroxylating dioxygenase alpha subunitQuickGO ontologyBLASTP
17603921760988597aromatic-ring-hydroxylating dioxygenase beta subunitQuickGO ontologyBLASTP
176103517620901056short-chain dehydrogenasereductase SDRQuickGO ontologyBLASTP
176215117635571407FAD-dependent pyridine nucleotide-disulphide oxidoreductaseQuickGO ontologyBLASTP
17640591764958900Integrase catalytic regionQuickGO ontologyBLASTP
17649551765287333transposase IS3IS911QuickGO ontologyBLASTP
176545117665211071Cupin 2 conserved barrelQuickGO ontologyBLASTP
17665621767560999dihydrodipicolinate synthetaseQuickGO ontologyBLASTP
17675791768469891Glyoxalasebleomycin resistance proteindioxygenaseQuickGO ontologyBLASTP
17685151768901387hypothetical proteinBLASTP
17691271770095969dihydrodipicolinate synthetaseQuickGO ontologyBLASTP
17723241773034711aromatic-ring-hydroxylating dioxygenase beta subunitQuickGO ontologyBLASTP
177315717749291773fumarate reductasesuccinate dehydrogenase flavoprotein-like proteinQuickGO ontologyBLASTP
177492617752162914Fe-4S ferredoxin iron-sulfur binding proteinQuickGO ontologyBLASTP
177541217768721461Aldehyde dehydrogenase NADQuickGO ontologyBLASTP
17771461777361216hypothetical proteinBLASTP
17775271778096570Integrase catalytic regionQuickGO ontologyBLASTP
17783801778916537hypothetical protein
17790001779509510aromatic-ring-hydroxylating dioxygenase beta subunitQuickGO ontologyBLASTP
177957017809371368ring hydroxylating dioxygenase alpha subunitQuickGO ontologyBLASTP
17810021781784783short-chain dehydrogenasereductase SDRQuickGO ontologyBLASTP
178184217828671026Alcohol dehydrogenase zinc-binding proteinQuickGO ontologyBLASTP
178288217839671086hypothetical proteinBLASTP
178396417851451182Rieske 2Fe-2S regionQuickGO ontologyBLASTP
17851391785636498aromatic-ring-hydroxylating dioxygenase beta subunitQuickGO ontologyBLASTP
17856651786063399Sterol-binding proteinQuickGO ontologyBLASTP
17860661786584519intradiol ring-cleavage dioxygenaseQuickGO ontologyBLASTP
17867401787540801protein of unknown function DUF140QuickGO ontologyBLASTP
17875371788022486putative ABC transport system permease proteinQuickGO ontologyBLASTP
178801317890891077Integrase catalytic regionQuickGO ontologyBLASTP
17891671789517351hypothetical proteinBLASTP
178952317908691347Mammalian cell entryQuickGO ontologyBLASTP
179092717919551029Mammalian cell entryQuickGO ontologyBLASTP
179195217932801329Mammalian cell entryQuickGO ontologyBLASTP
179327717946231347Mammalian cell entryQuickGO ontologyBLASTP
179462017957591140Mammalian cell entryQuickGO ontologyBLASTP
179575917972131455Mammalian cell entryQuickGO ontologyBLASTP
17972101797875666hypothetical proteinBLASTP
17978721798531660hypothetical proteinBLASTP
179861017997431134Epoxide hydrolase-like proteinQuickGO ontologyBLASTP
179990618013391434aldehyde dehydrogenaseQuickGO ontologyBLASTP
180165518031151461Drug resistance transporter EmrBQacA subfamilyQuickGO ontologyBLASTP
18031051803584480transcriptional regulator MarR familyQuickGO ontologyBLASTP
180381818052091392ring hydroxylating dioxygenase alpha subunitQuickGO ontologyBLASTP
18052061805748543aromatic-ring-hydroxylating dioxygenase beta subunitQuickGO ontologyBLASTP
180585518068861032Alcohol dehydrogenase zinc-binding proteinQuickGO ontologyBLASTP