Pre_GI Gene

Host: NC_008228 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008228:3679949 Pseudoalteromonas atlantica T6c, complete genome

Host Lineage: Pseudoalteromonas atlantica; Pseudoalteromonas; Pseudoalteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Isolated from a biofilm from San Diego Bay in California. Marine biofilm bacterium associated with shell disease in shellfish. A common marine bacterium that exists both in the water column, and in biofilms attached to surfaces. This organism produces a well characterized, commercially important agarase. Pseudoalteromonas atlantica has been isolated from lesions on crabs with shell disease. Shell disease is characterized by progressive degradation of the shell, often leading to an infection of the hemolymph (blood) and may be caused by Pseudoalteromonas, Alteromonas, Vibrio, or other marine organisms. In addition to producing extracellular enzymes which attack the shell, Pseudoalteromonas atlantica produces a the lipopolysaccharide which has been shown to be a potential virulence factor in shell disease.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
367994936812921344two component sigma54 specific transcriptional regulator Fis familyQuickGO ontologyBLASTP
368129736824931197histidine kinaseQuickGO ontologyBLASTP
368264836840811434sigma54 specific transcriptional regulator Fis familyQuickGO ontologyBLASTP
36843343685137804flagellin-likeQuickGO ontologyBLASTP
368553936890783540protein of unknown function DUF115QuickGO ontologyBLASTP
36891533689950798hypothetical protein
36899853690764780Cephalosporin hydroxylaseQuickGO ontologyBLASTP
36907573691467711hypothetical proteinBLASTP
36914683692163696formyl transferase-likeQuickGO ontologyBLASTP
36921663692792627Methyltransferase type 12QuickGO ontologyBLASTP
369298136940931113DegTDnrJEryC1StrS aminotransferaseQuickGO ontologyBLASTP
369409036953101221C-methyltransferaseQuickGO ontologyBLASTP
36953073695870564dTDP-4-dehydrorhamnose 35-epimeraseQuickGO ontologyBLASTP
369586736969251059CDP-glucose 46-dehydrataseQuickGO ontologyBLASTP
36969253697692768glucose-1-phosphate cytidylyltransferaseQuickGO ontologyBLASTP
369768936990051317glycosyl transferase family 2QuickGO ontologyBLASTP
36990603699929870glycosyl transferase family 2QuickGO ontologyBLASTP
370006937012771209glycosyl transferase family 2QuickGO ontologyBLASTP
370127937023881110Methyltransferase type 11QuickGO ontologyBLASTP
370238537036861302Capsule polysaccharide biosynthesisQuickGO ontologyBLASTP