Pre_GI Gene

Host: NC_008261:576923 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008261:576923 Clostridium perfringens ATCC 13124, complete genome

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
5769235779391017UDP-glucose 4-epimeraseQuickGO ontologyBLASTP
578221579165945UTP-glucose-1-phosphate uridylyltransferaseQuickGO ontologyBLASTP
579492580121630hypothetical protein
58032858040376tRNA-MetQuickGO ontologyBLASTP
5807665854394674cell wall binding repeat domain proteinQuickGO ontologyBLASTP
5858665880702205alpha-galactosidaseQuickGO ontologyBLASTP
588204588953750sortase BQuickGO ontologyBLASTP
589192589716525signal peptidase IQuickGO ontologyBLASTP
589770590405636hypothetical proteinBLASTP
590453591151699hypothetical proteinBLASTP
591175591882708hypothetical proteinBLASTP
5919025936441743von Willebrand factor type A domain proteinQuickGO ontologyBLASTP
593925594641717DNA-binding response regulatorQuickGO ontologyBLASTP
5946465959411296sensor histidine kinaseQuickGO ontologyBLASTP
596119596925807hypothetical proteinBLASTP