Pre_GI Gene

Host: NC_008262:101731 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008262:101731 Clostridium perfringens SM101, complete genome

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This is a enterotoxin-producing food poisoning strain. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
101731102174444hypothetical proteinBLASTP
1023991035651167glucose-1-phosphate adenylyltransferaseQuickGO ontologyBLASTP
1035951047011107glucose-1-phosphate adenylyltransferase GlgD subunitQuickGO ontologyBLASTP
104764105210447acetobutylicum phosphotransbutyrylaseQuickGO ontologyBLASTP
1053771067891413cardiolipin synthetaseQuickGO ontologyBLASTP
11266911274476tRNA-LysQuickGO ontologyBLASTP
113027113875849SACPA operon antiterminator sacTQuickGO ontologyBLASTP
113907114386480pts system glucose-specific iia componentQuickGO ontologyBLASTP
1150341164791446PTS system N-acetylglucosamine-specific IIBC componentQuickGO ontologyBLASTP
116548117066519transcriptional regulator TetR familyQuickGO ontologyBLASTP
12245712253175tRNA-AsnQuickGO ontology
1231901252802091translation elongation factor GQuickGO ontologyBLASTP