Pre_GI Gene

Host: NC_008593:2457594 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008593:2457594 Clostridium novyi NT, complete genome

Host Lineage: Clostridium novyi; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain (NT) was created so that it lacks the lethal toxin. Injection of spores of this organism into mice harboring tumors resulted in an increased immune response and destruction of the tumor tissue in a method known as COBALT (combination bacteriolytic therapy) when the spores along with chemotherapeutic agents or radiation are co-administered. The anaerobic bacteria preferentially target hypoxic cancer tissue and stimulate immune responses to that tissue. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. Clostridium novyi is an anaerobic bacterium found in soil, aquatic sediments, and intestinal tract of both animals and humans. Some types produce lethal toxins.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
24575942458544951magnesium transporter CorA familyQuickGO ontologyBLASTP
24586202459537918mccF-like proteinQuickGO ontologyBLASTP
245969624611351440ISBma2 transposaseQuickGO ontologyBLASTP
246121424625961383sodium-dependent symporter family proteinQuickGO ontologyBLASTP
24627472463484738transcriptional regulator Sir2 familyQuickGO ontologyBLASTP
24637092464584876conserved protein putativeQuickGO ontologyBLASTP
246476924648851175S ribosomal RNAQuickGO ontologyBLASTP
24649642467868290523S ribosomal RNAQuickGO ontologyBLASTP
24653442465985642hypothetical proteinBLASTP
24680572469549149316S ribosomal RNAQuickGO ontologyBLASTP
24701002470843744peptidil-prolyl cis-trans isomeraseQuickGO ontologyBLASTP
2471065247114076tRNA-LysQuickGO ontologyBLASTP
2471411247148676tRNA-PheQuickGO ontologyBLASTP
2472004247207976tRNA-PheQuickGO ontologyBLASTP
247208524722011175S ribosomal RNAQuickGO ontologyBLASTP
24722382475142290523S ribosomal RNAQuickGO ontologyBLASTP
24726182473259642hypothetical proteinBLASTP
24753312476823149316S ribosomal RNAQuickGO ontologyBLASTP
24771782478074897CAAX amino terminal protease family proteinQuickGO ontologyBLASTP
24781972478979783hypothetical proteinBLASTP
24789792479674696ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
24796772480045369transcriptional regulator GntR familyQuickGO ontologyBLASTP
24801852480601417Thioesterase superfamily proteinQuickGO ontologyBLASTP
24806962481367672Uracil DNA glycosylase superfamily proteinQuickGO ontologyBLASTP
24814612482444984endoglucanase aminopeptidase M42 familyQuickGO ontologyBLASTP
24824682482704237hypothetical protein
24827482483716969endoglucanase aminopeptidase M42 familyQuickGO ontologyBLASTP
248370724847261020Peptidase family M20M25M40 proteinQuickGO ontologyBLASTP
24848812485810930N-acetylmuramoyl-L-alanine amidaseQuickGO ontologyBLASTP
248595624871821227Mechanosensitive ion channel familyQuickGO ontologyBLASTP
2487268248734376tRNA-LysQuickGO ontologyBLASTP
248735024874661175S ribosomal RNAQuickGO ontologyBLASTP
24875022490406290523S ribosomal RNAQuickGO ontologyBLASTP
24878822488523642hypothetical proteinBLASTP
24905952492087149316S ribosomal RNAQuickGO ontologyBLASTP
24924852493423939probable ribosomal-protein S5-alanine N-acetyltransferaseQuickGO ontologyBLASTP
249343824946161179Major Facilitator Superfamily proteinQuickGO ontologyBLASTP
24946182495334717ThiF family proteinQuickGO ontologyBLASTP
24955082495693186hypothetical proteinBLASTP
24958572496036180hypothetical proteinBLASTP
24960712496568498MutTnudix family protein putativeQuickGO ontologyBLASTP
24966702497359690sugar fermentation stimulation proteinQuickGO ontologyBLASTP
2497597249767175tRNA-GluQuickGO ontology
2497725249779975tRNA-GlnQuickGO ontology
2497806249788277tRNA-ArgQuickGO ontology
2497888249796174tRNA-GlyQuickGO ontologyBLASTP
2497976249805984tRNA-LeuQuickGO ontologyBLASTP
2498077249815175tRNA-GluQuickGO ontologyBLASTP
249815824982741175S ribosomal RNAQuickGO ontologyBLASTP
24983102501214290523S ribosomal RNAQuickGO ontologyBLASTP
24986902499331642hypothetical proteinBLASTP
2501342250141877tRNA-IleQuickGO ontology
2501422250149776tRNA-AlaQuickGO ontologyBLASTP
25015952503087149316S ribosomal RNAQuickGO ontologyBLASTP
25035012504394894hypothetical protein
25044562504710255Sigma-K factor processing regulatory protein BOFAQuickGO ontologyBLASTP