Pre_GI Gene

Host: NC_009512:3282500 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009512:3282500 Pseudomonas putida F1, complete genome

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from a polluted creek in Urbana, Illinois, USA by enrichment culture with ethylbenzyne as a sole source of carbon and energy. Its ability to degrade several different compounds including benzene, toluene, and ethylbenzene makes this species useful in the bioremediation of sites contaminated with multiple aromatic hydrocarbons. Underground gasoline tanks which have developed leaks can contaminate soil and water with a variety of these compounds. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
32825043283127624transcriptional regulator TetR familyQuickGO ontologyBLASTP
32832483283979732class II aldolaseadducin family proteinQuickGO ontologyBLASTP
32839763284332357Rieske 2Fe-2S domain proteinQuickGO ontologyBLASTP
32843433285122780short-chain dehydrogenasereductase SDRQuickGO ontologyBLASTP
32851193286057939Glyoxalasebleomycin resistance proteindioxygenaseQuickGO ontologyBLASTP
32860703286612543aromatic-ring-hydroxylating dioxygenase beta subunitQuickGO ontologyBLASTP
328662332879271305ring hydroxylating dioxygenase alpha subunitQuickGO ontologyBLASTP
328796032891681209FAD-dependent pyridine nucleotide-disulphide oxidoreductaseQuickGO ontologyBLASTP
328937532913241950propionate--CoA ligaseQuickGO ontologyBLASTP
329137232927541383membrane protein involved in aromatic hydrocarbon degradationQuickGO ontologyBLASTP
329279132938401050Oxidoreductase FAD-binding domain proteinQuickGO ontologyBLASTP
329418432953141131fatty acid desaturaseQuickGO ontologyBLASTP
329536932968531485aldehyde dehydrogenaseQuickGO ontologyBLASTP
32969043297662759short-chain dehydrogenasereductase SDRQuickGO ontologyBLASTP
32979323298594663dienelactone hydrolaseQuickGO ontologyBLASTP
32989353299195261hypothetical proteinBLASTP
32995063300126621transcriptional regulator TetR familyQuickGO ontologyBLASTP
33007703300880111hypothetical proteinBLASTP
33009333301145213hypothetical proteinBLASTP
33016473302384738hypothetical proteinBLASTP
33024983302713216phage transcriptional regulator AlpAQuickGO ontologyBLASTP
33027173303595879Cobyrinic acid ac-diamide synthaseQuickGO ontologyBLASTP
330361033051481539hypothetical proteinBLASTP
33051653305716552hypothetical proteinBLASTP
330571033069271218hypothetical proteinBLASTP
33070793307834756Domain of unknown function DUF1845QuickGO ontologyBLASTP
33078313308325495hypothetical proteinBLASTP
33083313308759429single-strand binding proteinPrimosomal replication protein nQuickGO ontologyBLASTP
33088543309117264hypothetical protein
33092243309568345transcriptional regulator XRE familyQuickGO ontologyBLASTP
330966633116301965DNA topoisomerase IIIQuickGO ontologyBLASTP
33123723312905534hypothetical proteinBLASTP
33129733313230258hypothetical protein
33132973313791495DNA repair protein RadCQuickGO ontologyBLASTP
33138573314573717hypothetical proteinBLASTP
33147043315219516hypothetical proteinBLASTP
33152163315887672hypothetical proteinBLASTP