Pre_GI Gene

Host: NC_009800:3821824 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009800:3821824 Escherichia coli HS, complete genome

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
38208783821837960polysaccharide deacetylase family proteinQuickGO ontologyBLASTP
382182438228581035glycosyl transferase group 2 family proteinQuickGO ontologyBLASTP
382309738241221026L-threonine 3-dehydrogenaseQuickGO ontologyBLASTP
3824132382532811972-amino-3-ketobutyrate coenzyme A ligaseQuickGO ontologyBLASTP
38255423826474933ADP-glyceromanno-heptose 6-epimeraseQuickGO ontologyBLASTP
382648438275301047lipopolysaccharide heptosyltransferase IIQuickGO ontologyBLASTP
38275343828505972lipopolysaccharide heptosyltransferase IQuickGO ontologyBLASTP
382857538298281254O-antigen polymeraseQuickGO ontologyBLASTP
38298743830857984glycosyl transferase group 2 family proteinQuickGO ontologyBLASTP
383094238319671026lipopolysaccharide 12-galactosyltransferaseQuickGO ontologyBLASTP
38319933832685693lipopolysaccharide core biosynthesis protein RfaYQuickGO ontologyBLASTP
38326953833690996lipopolysaccharide 12-glucosyltransferaseQuickGO ontologyBLASTP
383370738347231017lipopolysaccharide 13-galactosyltransferaseQuickGO ontologyBLASTP
38347393835536798lipopolysaccharide core biosynthesis protein RfaPQuickGO ontologyBLASTP
383552938366531125lipopolysaccharide core biosynthesis protein RfaGQuickGO ontologyBLASTP
383665038377081059lipopolysaccharide core biosynthesis glycosyltransferase RfaQQuickGO ontologyBLASTP
3838121383939812783-deoxy-D-manno-octulosonic-acid transferaseQuickGO ontologyBLASTP
38394063839885480pantetheine-phosphate adenylyltransferaseQuickGO ontologyBLASTP
38399243840733810formamidopyrimidine-DNA glycosylaseQuickGO ontologyBLASTP
38408313840998168ribosomal protein L33QuickGO ontologyBLASTP
38410193841255237ribosomal protein L28QuickGO ontologyBLASTP
38414723842140669DNA repair protein RadCQuickGO ontologyBLASTP
384231238435321221phosphopantothenoylcysteine decarboxylasephosphopantothenate--cysteine ligaseQuickGO ontologyBLASTP
38435133843968456dUTP diphosphataseQuickGO ontologyBLASTP
38440753844671597transcriptional regulator domain protein TetR familyQuickGO ontologyBLASTP
38447083845349642orotate phosphoribosyltransferaseQuickGO ontologyBLASTP