Pre_GI Gene

Host: NC_010322:5349000 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010322:5349000 Pseudomonas putida GB-1 chromosome, complete genome

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
53490485349806759putative periplasmic ligand-binding sensor proteinQuickGO ontologyBLASTP
53499735350629657hypothetical proteinBLASTP
53507175351208492hypothetical protein
535122753533202094ATP-dependent helicase HrpBQuickGO ontologyBLASTP
535345553558152361hypothetical proteinBLASTP
535579953579012103integrase family proteinQuickGO ontologyBLASTP
53578985358524627hypothetical proteinBLASTP
535850253599681467integrase family proteinQuickGO ontologyBLASTP
53605275360682156ISPsy5 transposaseQuickGO ontologyBLASTP
536071553622351521transposase IS66QuickGO ontologyBLASTP
53622635362622360IS66 Orf2 family proteinQuickGO ontologyBLASTP
53631215363489369hypothetical proteinBLASTP
536361853647361119RES domain-containing proteinQuickGO ontologyBLASTP
53648955365803909hypothetical protein
53659475366450504hypothetical proteinBLASTP
53664965366714219hypothetical proteinBLASTP
536673253685581827hypothetical proteinBLASTP
53690365369392357hypothetical proteinBLASTP
53694665370287822hypothetical proteinBLASTP
53702845370901618XRE family transcriptional regulatorQuickGO ontology
53719455372334390hypothetical protein
53723725372731360hypothetical proteinBLASTP
53727895373517729metallophosphoesteraseQuickGO ontologyBLASTP
53735975374160564hypothetical proteinBLASTP
53749405375404465Fis family transcriptional regulatorQuickGO ontologyBLASTP
537556153780952535ATP-dependent helicase HrpBQuickGO ontologyBLASTP
53781945378616423hypothetical protein
53786685378934267hypothetical protein
53790575379263207hypothetical proteinBLASTP
53792665379520255hypothetical proteinBLASTP
538009953813671269hypothetical proteinBLASTP
53813645382308945hypothetical proteinBLASTP
538228953841601872KAP P-loop domain-containing proteinQuickGO ontologyBLASTP
538433053856971368hypothetical proteinBLASTP
53860335386470438transposase IS4 family proteinQuickGO ontologyBLASTP
53865185386886369ISPs1 transposase OrfAQuickGO ontologyBLASTP
53869675387236270hypothetical proteinBLASTP
538747153891771707PASPAC sensor-containing diguanylate cyclasephosphodiesteraseQuickGO ontologyBLASTP
53909445391924981transposase IS4 family proteinQuickGO ontologyBLASTP
53921875392555369ISPs1 transposase OrfAQuickGO ontologyBLASTP
53926035393040438transposase IS4 family proteinQuickGO ontologyBLASTP
53930375393699663DEADDEAH box helicaseQuickGO ontologyBLASTP
53938165394235420hypothetical proteinBLASTP
53942585395130873cation diffusion facilitator family transporterQuickGO ontologyBLASTP
53951655396001837hypothetical protein
53963935396869477AsnC family transcriptional regulatorQuickGO ontologyBLASTP
53969245397127204hypothetical proteinBLASTP
53971635397801639pseudouridine synthaseQuickGO ontologyBLASTP
539780853992711464AMP nucleosidaseQuickGO ontologyBLASTP
539937754010291653acyl-CoA dehydrogenase domain-containing proteinQuickGO ontologyBLASTP
540115654031441989integral membrane sensor signal transduction histidine kinaseQuickGO ontologyBLASTP