Pre_GI Gene

Host: NC_010334:2749250 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010334:2749250 Shewanella halifaxensis HAW-EB4, complete genome

Host Lineage: Shewanella halifaxensis; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from sediment in a munitions-dumping area of the Emerald Basin (depth of 215 m, Atlantic Ocean), offshore of Halifax Harbour (Nova Scotia, Canada). It is capable of efficiently degrading RDX (hexahydro-1,3,5-trinitro-1,3,5-triazine), an explosive compound that contaminates the environment. This bacterium is an obligate respiratory organism.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
274925027516372388NiFe hydrogenase maturation protein HypFQuickGO ontologyBLASTP
27517372752498762hydrogenase accessory protein HypBQuickGO ontologyBLASTP
27524982752746249hydrogenase assembly chaperone hypChupFQuickGO ontologyBLASTP
275274627538671122hydrogenase expressionformation protein HypDQuickGO ontologyBLASTP
275386427548801017hydrogenase expressionformation protein HypEQuickGO ontologyBLASTP
27548802755227348hydrogenase expressionsynthesis HypAQuickGO ontologyBLASTP
275541527564221008TPR repeat-containing proteinQuickGO ontologyBLASTP
27564992757461963type II secretion system proteinQuickGO ontologyBLASTP
27574632758440978type II secretion system proteinQuickGO ontologyBLASTP
275845227597801329type II secretion system protein EQuickGO ontologyBLASTP
275978227610081227Flp pilus assembly protein ATPase CpaE-like proteinQuickGO ontologyBLASTP
27611012761550450TadE family proteinQuickGO ontologyBLASTP
27615472762026480TadE family proteinQuickGO ontologyBLASTP
276203727633771341hypothetical proteinBLASTP
27633982763646249hypothetical proteinBLASTP
276372427651601437type II and III secretion system proteinQuickGO ontologyBLASTP
27652092766021813SAF domain proteinQuickGO ontologyBLASTP
276605427673761323AAA ATPaseQuickGO ontologyBLASTP
27673872767953567peptidase A24A prepilin type IVQuickGO ontologyBLASTP
27680292768226198hypothetical proteinBLASTP
27687732769174402transposase and inactivated derivativeQuickGO ontologyBLASTP
276916727705011335Peptidoglycan-binding domain 1 proteinQuickGO ontologyBLASTP
277107927731332055sulfataseQuickGO ontologyBLASTP