Pre_GI Gene

Host: NC_010407:3174470 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010407:3174470 Clavibacter michiganensis subsp. sepedonicus chromosome, complete

Host Lineage: Clavibacter michiganensis; Clavibacter; Microbacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Causative agent of bacterial ring rot. Isolated from infected potato. This organism was first described and classified in 1914 as "Bacterium sepedonicus" and is considered a major plant pathogen. It is a phytopathogenic actinomycete that causes wilt and tuber rot in potato, which is a plant vascular disease with very high bacterial titers. Pathogenicity is believed to be associated with the presence of two plasmids, pCSL1 and pCSL2. This species is subdivided into five subspecies: michiganensis, sepedonicus, nebraskensis, tesselarius and insidiosus each of which infects specific hosts: tomato, potato, corn, wheat and alfalfa, respectively. Members of the Clavibacter genus are known to produce antimicrobial compounds.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
3174470317535488514-dihydroxy-2-naphthoate octaprenyltransferaseQuickGO ontologyBLASTP
31755613176313753putative phosphoglycerate mutaseQuickGO ontologyBLASTP
31764133177321909putative beta-lactamaseQuickGO ontologyBLASTP
317733331793151983putative metallopeptidaseQuickGO ontologyBLASTP
31793403180302963putative insertion element IS1121 transposaseQuickGO ontologyBLASTP
31804193180604186BLASTP
31806563180772117hypothetical protein
31807823181174393hypothetical protein
31811833181671489hypothetical protein
31818653182470606deoxycytidine triphosphate deaminaseQuickGO ontologyBLASTP
318278031838471068hypothetical proteinBLASTP
318384431852921449putative restriction-modification system methyltransferaseQuickGO ontologyBLASTP
318539731865721176putative restriction-modification system methyltransferaseQuickGO ontologyBLASTP
31866093187364756putative transcriptional regulatorQuickGO ontology
318739231887921401gluconate permeaseQuickGO ontologyBLASTP
31888903189852963putative insertion element IS1121 transposaseQuickGO ontologyBLASTP
318989631909241029LacI family transcriptional regulatorQuickGO ontologyBLASTP
31909813191904924putative sugar transport integral membrane proteinQuickGO ontologyBLASTP
319190131930071107putative sugar transport integral membrane proteinQuickGO ontologyBLASTP
319309531944141320putative sugar-binding transport lipoproteinQuickGO ontologyBLASTP
319457631955921017putative oxidoreductaseQuickGO ontologyBLASTP
31957293196280552putative exported oxidoreductaseQuickGO ontologyBLASTP