Pre_GI Gene

Host: NC_011147:3686500 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011147:3686500 Salmonella enterica subsp. enterica serovar Paratyphi A str

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a clinical isolate collected from a child with paratyphoid fever in Karachi, Pakistan, 2004. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
368650536875301026L-threonine 3-dehydrogenaseQuickGO ontologyBLASTP
3687540368873611972-amino-3-ketobutyrate coenzyme A ligaseQuickGO ontologyBLASTP
36889393689871933ADP-L-glycero-D-manno-heptose-6-epimeraseQuickGO ontologyBLASTP
368987436909201047ADP-heptose--LPS heptosyltransferaseQuickGO ontologyBLASTP
36909203691873954ADP-heptose--LPS heptosyltransferaseQuickGO ontologyBLASTP
369191336931271215O-antigen ligaseQuickGO ontologyBLASTP
369318336943281146lipopolysaccharide 12-N-acetylglucosaminetransferaseQuickGO ontologyBLASTP
36944283695237810lipopolysaccharide core biosynthesis proteinQuickGO ontologyBLASTP
36953873696085699lipopolysaccharide core biosynthesis proteinQuickGO ontologyBLASTP
369610836971181011lipopolysaccharide 12-glucosyltransferaseQuickGO ontologyBLASTP
369713636981491014lipopolysaccharide 13-galactosyltransferaseQuickGO ontologyBLASTP
369815536992341080UDP-D-galactoseglucosyllipopolysaccharide-1 6-D-galactosyltransferaseQuickGO ontologyBLASTP
36992483700228981hypothetical proteinBLASTP
37002843701081798lipopolysaccharide core biosynthesis proteinQuickGO ontologyBLASTP
370107437021981125lipopolysaccharide core biosynthesis proteinQuickGO ontologyBLASTP
370219537032291035lipopolysaccharide core biosynthesis proteinQuickGO ontologyBLASTP
3703674370495112783-deoxy-D-manno-octulosonic-acid transferaseQuickGO ontologyBLASTP
37049603705439480phosphopantetheine adenylyltransferaseQuickGO ontologyBLASTP
37054673706276810formamidopyrimidine-DNA glycosylaseQuickGO ontologyBLASTP
3706374370654116850S ribosomal protein L33QuickGO ontologyBLASTP
3706555370679123750S ribosomal protein L28QuickGO ontologyBLASTP
37070093707674666DNA repair protein RadCQuickGO ontologyBLASTP
370785037090701221bifunctional phosphopantothenoylcysteine decarboxylasephosphopantothenate synthaseQuickGO ontologyBLASTP
37090513709506456deoxyuridine 5-triphosphate nucleotidohydrolaseQuickGO ontologyBLASTP
37096143710210597nucleoid occlusion proteinQuickGO ontologyBLASTP
37102883710929642orotate phosphoribosyltransferaseQuickGO ontologyBLASTP
37110083711724717ribonuclease PHQuickGO ontologyBLASTP