Pre_GI Gene

Host: NC_012125:2531817 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012125:2531817 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
25310262531823798ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
25318172532605789inner membrane transport proteinQuickGO ontologyBLASTP
25326192533593975inner membrane transport proteinQuickGO ontologyBLASTP
253359325353501758substrate-binding transport proteinQuickGO ontologyBLASTP
25353702535513144hypothetical proteinBLASTP
25359092536223315lipoproteinQuickGO ontologyBLASTP
25363752536902528cytochromeQuickGO ontologyBLASTP
253698725380301044hypothetical proteinBLASTP
25383692538839471heat shock proteinQuickGO ontologyBLASTP
25391552539328174hypothetical proteinBLASTP
25394602539585126lipoproteinQuickGO ontologyBLASTP
25399632540307345lysozyme inhibitorQuickGO ontologyBLASTP
25415292542086558outer membrane invasion proteinQuickGO ontologyBLASTP
25428982543161264outer membrane virulence proteinQuickGO ontologyBLASTP
25432932543505213cold shock proteinQuickGO ontologyBLASTP
25439202544441522lipoproteinQuickGO ontologyBLASTP
25446262544871246virulence proteinQuickGO ontologyBLASTP
25453612546149789envelope lipoproteinQuickGO ontologyBLASTP
25464712546686216hypothetical proteinBLASTP
25466552546981327hypothetical proteinBLASTP
254717425482591086bacteriophage proteinQuickGO ontologyBLASTP
254870725499571251isocitrate dehydrogenaseQuickGO ontologyBLASTP
25500572550794738ribosomal large subunit pseudouridine synthase BQuickGO ontologyBLASTP
25507912551120330hypothetical proteinBLASTP
25511322551593462MutT family proteinQuickGO ontologyBLASTP
255164725527531107tRNA-specific 2-thiouridylase MnmAQuickGO ontologyBLASTP
25528342553481648hypothetical proteinBLASTP
255348525548551371adenylosuccinate lyaseQuickGO ontologyBLASTP
25549792555653675DNA-binding transcriptional regulator PhoPQuickGO ontologyBLASTP
255565325571161464sensor protein PhoQQuickGO ontologyBLASTP
255716725583181152hypothetical proteinBLASTP
255835825596921335hypothetical proteinBLASTP
255969625609251230peptidase TQuickGO ontologyBLASTP