Pre_GI Gene

Host: NC_012917:2362725 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012917:2362725 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
23627252363636912hypothetical proteinBLASTP
236393423654211488Pyridoxal-dependent decarboxylaseQuickGO ontologyBLASTP
23654402366822138324-diaminobutyrate 4-transaminaseQuickGO ontologyBLASTP
236722123685161296hypothetical proteinBLASTP
23685222368809288hypothetical proteinBLASTP
2368930236899566
236927223705071236major facilitator superfamily MFS_1QuickGO ontologyBLASTP
23706222371380759alphabeta hydrolase fold proteinQuickGO ontologyBLASTP
23715482371820273hypothetical protein
23721752372984810hypothetical proteinBLASTP
237300623742801275putative cytoplasmic proteinQuickGO ontologyBLASTP
23747642375087324hypothetical proteinBLASTP
23751402375370231hypothetical protein
237556523767311167type II and III secretion system proteinQuickGO ontologyBLASTP
237672823777741047Zonular occludens toxinQuickGO ontologyBLASTP
23777802378058279putative phage-related membrane proteinQuickGO ontologyBLASTP
237808423793371254hypothetical proteinBLASTP
23794762379712237putative phage-related membrane proteinQuickGO ontology
23798812380000120hypothetical protein
23800302380347318hypothetical proteinBLASTP
23803592380625267hypothetical protein
23805942380794201hypothetical protein
238076923825771809replication protein AQuickGO ontologyBLASTP
23828012383103303hypothetical protein
23833562383469114hypothetical protein
23834802383815336steroid delta-isomerase domain-containing proteinQuickGO ontologyBLASTP
23839422384208267hypothetical protein
23842052385104900transcriptional regulator ArgP LysR familyQuickGO ontologyBLASTP
238528423872571974methyl-accepting chemotaxis sensory transducerQuickGO ontologyBLASTP