Pre_GI Gene

Host: NC_012917:3198000 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012917:3198000 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
319821931995021284membrane protein involved in aromatic hydrocarbon degradationQuickGO ontologyBLASTP
319962432012071584malatequinone oxidoreductaseQuickGO ontologyBLASTP
32015703202331762VacJ family lipoproteinQuickGO ontologyBLASTP
32029483203868921formatenitrite transporterQuickGO ontologyBLASTP
320419932053891191integrase family proteinQuickGO ontologyBLASTP
32056163206326711hypothetical protein
32069903207238249BLASTP
32074333207735303hypothetical proteinBLASTP
32078503208311462GCN5-related N-acetyltransferaseQuickGO ontologyBLASTP
32083953209021627hypothetical proteinBLASTP
32090443209841798hypothetical proteinBLASTP
32098383210641804hypothetical proteinBLASTP
32107323211229498transcriptional regulator AsnC familyQuickGO ontologyBLASTP
321131232125081197major facilitator superfamily MFS_1QuickGO ontologyBLASTP
32126123213403792Necrosis inducing proteinQuickGO ontologyBLASTP
32136173214372756hypothetical proteinBLASTP
32144983214764267hypothetical proteinBLASTP
32152913215830540hypothetical proteinBLASTP
32159373216509573hypothetical proteinBLASTP
321657632179581383DEADDEAH box helicase domain proteinQuickGO ontologyBLASTP
32180793218813735hypothetical proteinBLASTP
32188103219580771ABC transporter relatedQuickGO ontologyBLASTP
321958232206191038transport system permease proteinQuickGO ontologyBLASTP
322061632216801065periplasmic binding proteinQuickGO ontologyBLASTP