Pre_GI Gene

Host: NC_012917:3241196 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012917:3241196 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
324119632424371242aminotransferase class I and IIQuickGO ontologyBLASTP
32427913243771981Mandelate racemasemuconate lactonizing proteinQuickGO ontologyBLASTP
32438143244674861aminotransferase class IVQuickGO ontologyBLASTP
324475532472022448MscS Mechanosensitive ion channelQuickGO ontologyBLASTP
324788832491021215integrase family proteinQuickGO ontologyBLASTP
32501723250738567hypothetical protein
325073832524051668hypothetical proteinBLASTP
325242232535941173restriction modification system DNA specificity domain proteinQuickGO ontologyBLASTP
325359132552251635N-6 DNA methylaseQuickGO ontologyBLASTP
325528932587023414type III restriction protein res subunitQuickGO ontologyBLASTP
32588513259057207phage transcriptional regulator AlpAQuickGO ontologyBLASTP
32591613259742582hypothetical proteinBLASTP
32606703261563894hypothetical proteinBLASTP
32616663262541876GTP-binding protein HSR1-relatedQuickGO ontologyBLASTP
32626263263447822hypothetical proteinBLASTP
32636723264370699regulatory protein DeoRQuickGO ontologyBLASTP
32645523265121570hypothetical proteinBLASTP
32651573265630474hypothetical proteinBLASTP
32656473265880234CP4-57 prophage inner membrane proteinQuickGO ontologyBLASTP
32659653266438474DNA repair protein RadCQuickGO ontologyBLASTP
32664783266813336YagBYeeUYfjZ family proteinQuickGO ontologyBLASTP
32668833267203321hypothetical proteinBLASTP
32673193268152834hypothetical proteinBLASTP
3268210326830596hypothetical protein
32709403271836897HPr kinaseQuickGO ontologyBLASTP
32718403272769930hypothetical protein
327275632739071152DegTDnrJEryC1StrS aminotransferaseQuickGO ontologyBLASTP
327390032750781179hypothetical protein
32750753275536462NUDIX hydrolaseQuickGO ontologyBLASTP
327553332767891257Radical SAM domain proteinQuickGO ontologyBLASTP
327679332780971305nucleotide sugar dehydrogenaseQuickGO ontologyBLASTP
32781043278706603hypothetical protein
32786933278974282hypothetical protein
32789673279785819DNA polymerase beta domain protein regionQuickGO ontology
32798363280063228hypothetical protein
32805863280720135BLASTP
328088932823221434monooxygenase FAD-bindingQuickGO ontologyBLASTP
32823193283197879Taurine catabolism dioxygenase TauDTfdAQuickGO ontologyBLASTP
32834323283653222acyl carrier proteinQuickGO ontologyBLASTP
328367032851031434AMP-dependent synthetase and ligaseQuickGO ontologyBLASTP
328510032862181119membrane bound O-acyl transferase MBOAT family proteinQuickGO ontologyBLASTP
32862293286351123hypothetical protein
328634832874841137polyglycerophosphate chain D-alanine transfer proteinQuickGO ontologyBLASTP
32879613288365405hypothetical protein
32887603289146387hypothetical protein
32891913290084894transcriptional regulator LysR familyQuickGO ontologyBLASTP
32903553290831477Cupin 2 conserved barrel domain proteinQuickGO ontologyBLASTP
32909473291270324phosphotransferase system PTS lactosecellobiose-specific IIA subunitQuickGO ontologyBLASTP
329176932927851017extracellular solute-binding protein family 1QuickGO ontologyBLASTP
329293832945151578binding-protein-dependent transport systems inner membrane componentQuickGO ontologyBLASTP