Pre_GI Gene

Host: NC_012917:3565268 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012917:3565268 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
35652683566002735outer membrane assembly lipoprotein YfiOQuickGO ontologyBLASTP
35663263566664339sigma 54 modulation proteinribosomal protein S30EAQuickGO ontologyBLASTP
356701235681721161chorismate mutaseQuickGO ontologyBLASTP
356827435693951122chorismate mutaseQuickGO ontologyBLASTP
356940235704751074phospho-2-dehydro-3-deoxyheptonate aldolaseQuickGO ontologyBLASTP
35707213571437717two component transcriptional regulator LytTR familyQuickGO ontologyBLASTP
35714843571831348hypothetical protein
35720873573025939hypothetical proteinBLASTP
357337435744321059integrase family proteinQuickGO ontologyBLASTP
35750623575961900hypothetical protein
35759753576832858CI repressorQuickGO ontologyBLASTP
35769553577290336hypothetical proteinBLASTP
35773293577838510regulatory CII family proteinQuickGO ontologyBLASTP
35783133578507195hypothetical protein
35786423578818177hypothetical proteinBLASTP
35788153579315501phage protein BQuickGO ontologyBLASTP
35793783579626249hypothetical proteinBLASTP
35796263579934309hypothetical proteinBLASTP
35799343580158225transcriptional regulator TraRDksA familyQuickGO ontologyBLASTP
35801703580436267hypothetical protein
358043335827362304replication protein AQuickGO ontologyBLASTP
35827333583041309hypothetical proteinBLASTP
35830413583232192hypothetical protein
35832323583570339hypothetical proteinBLASTP
35842603584778519hypothetical protein
35847783585137360hypothetical protein
358561735866361020phage portal protein PBSX familyQuickGO ontologyBLASTP
358663335884021770hypothetical proteinBLASTP
35885423589396855capsid scaffoldingQuickGO ontologyBLASTP
358944435905711128phage major capsid protein P2 familyQuickGO ontologyBLASTP
35905753591234660small terminase subunitQuickGO ontologyBLASTP