Pre_GI Gene

Host: NC_013061:1948365 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013061:1948365 Pedobacter heparinus DSM 2366, complete genome

Host Lineage: Pedobacter heparinus; Pedobacter; Sphingobacteriaceae; Sphingobacteriales; Bacteroidetes; Bacteria

General Information: Isolation: Soil; Temp: Mesophile; Temp: 25 - 30C; Habitat: Soil. Formerly Sphingobacterium heparinum this organism was isolated from soil. This organism is able to degrade heparin and heparan sulfate glycosaminoglycans, which are components of extracellular polysaccharides and the cell surface.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
194836519504882124hypothetical proteinBLASTP
195090619523751470regulatory protein GntR HTHQuickGO ontologyBLASTP
19525641952854291hypothetical protein
19528721953843972helix-turn-helix- domain containing protein AraC typeQuickGO ontologyBLASTP
19540461954696651hypothetical proteinBLASTP
19548531955326474hypothetical protein
19556141956102489hypothetical proteinBLASTP
19561951956443249hypothetical protein
195651819575791062hypothetical proteinBLASTP
195758319590971515hypothetical proteinBLASTP
195912119605151395RagBSusD domain proteinQuickGO ontologyBLASTP
196052619638673342TonB-dependent receptor plugQuickGO ontologyBLASTP
196415119653771227FecR proteinQuickGO ontologyBLASTP
19654791965595117
19656071966182576RNA polymerase sigma-70 factorQuickGO ontologyBLASTP
19661821966640459hypothetical protein
19670901967461372hypothetical protein
19675791968007429hypothetical protein
19682251968407183hypothetical protein
19684041968976573hypothetical proteinBLASTP
19689691969154186hypothetical protein
19692771969537261RNP-1 like RNA-binding proteinQuickGO ontologyBLASTP
19697641970708945helix-turn-helix- domain containing protein AraC typeQuickGO ontologyBLASTP
197090619759275022hypothetical protein