Pre_GI Gene

Host: NC_013198:394000 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013198:394000 Lactobacillus rhamnosus GG, complete genome

Host Lineage: Lactobacillus rhamnosus; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus rhamnosus is used in the manufacture of cheese and other dairy products to aid ripening and enhance flavors. This organism has also been shown to stimulate the immune system and have antibacterial activity against intestinal pathogens, indicating that it may be useful as a probiotic.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
394097394282186predicted ORFQuickGO ontology
3943913957791389permease of the major facilitator superfamilyQuickGO ontologyBLASTP
395755396189435transcriptional regulator MarR familyQuickGO ontologyBLASTP
396186396746561hypothetical protein
396929397144216predicted ORFQuickGO ontology
397288397575288transcriptional regulator Helix-turn-helix protein xre family shikimate 5-dehydrogenaseQuickGO ontologyBLASTP
397793398128336predicted ORFQuickGO ontology
398232398693462predicted ORFQuickGO ontology
3992114006951485DNA-bindingPRD domain proteinQuickGO ontologyBLASTP
400685401113429predicted ORFQuickGO ontologyBLASTP
401179401628450PTS system IIA componentQuickGO ontologyBLASTP
401644401961318PTS system IIB componentQuickGO ontologyBLASTP
4019954030951101PTS system IIC componentQuickGO ontologyBLASTP
403139403807669transaldolase 20 kDa phosphoprotein orfU CSI9QuickGO ontologyBLASTP
403800404489690ribulose-phosphate 3-epimerase family proteinQuickGO ontologyBLASTP
404798405247450PTS system mannitolfructose-specific EIIA component Ntr-typeQuickGO ontologyBLASTP
405249405530282PTS system lactosecellobiosemannitolpentitolgalactitolfructoseL -ascorbate-specific EIIB component lipoprotein SgaB SgaTQuickGO ontologyBLASTP
405558405971414PTS system EIIC componentQuickGO ontologyBLASTP
4059764069921017transposase IS30QuickGO ontologyBLASTP
4070684081171050PTS system ascorbate-specific IIC componentQuickGO ontologyBLASTP
408138408995858transketolase N-terminal subunitQuickGO ontologyBLASTP
40898841000410171-deoxyxylulose-5-phosphate synthasetransketolase C-terminal subunitQuickGO ontologyBLASTP
410196411050855fructokinasesQuickGO ontologyBLASTP
411100411858759lactose phosphotransferase PTS system repressorQuickGO ontologyBLASTP
412099412572474PTS system fructose-specific IIA componentQuickGO ontologyBLASTP
412577412906330PTS system fructose-specific IIB componentQuickGO ontologyBLASTP
4129314140371107PTS system fructose-specific IIC componentQuickGO ontologyBLASTP
4142014152171017transposase IS30QuickGO ontologyBLASTP
415271416113843fructose-bisphosphate aldolase class II family proteinQuickGO ontologyBLASTP
416135417028894fructose-bisphosphate aldolase class II family proteinQuickGO ontologyBLASTP
417573418049477PTS system IIB componentQuickGO ontologyBLASTP
418021418449429PTS system mannose-specific IIAB componentQuickGO ontologyBLASTP
4184674201551689PTS system mannose-specific IICD componentQuickGO ontologyBLASTP
420195420905711translaldolaseQuickGO ontologyBLASTP
4211094221401032sugar-binding transcriptional regulator LacI familyQuickGO ontologyBLASTP
422379423293915transcriptional regulator GntR familyQuickGO ontologyBLASTP
423326423676351hypothetical protein
423678424040363hypothetical proteinBLASTP
4241014253961296transport system permease proteinQuickGO ontologyBLASTP
425426426310885metal-dependent hydrolase with the TIM-barrel foldQuickGO ontologyBLASTP
4263034274091107CysMet metabolism pyridoxal-phosphate-dependent enzymeQuickGO ontologyBLASTP
4274004285721173alanine racemase family proteinQuickGO ontologyBLASTP
4285744298031230phosphopentomutaseQuickGO ontologyBLASTP
430131430967837DNA-directed RNA polymerase subunit deltaQuickGO ontologyBLASTP
431050431610561conserved hypothetical protein integral membrane protein by homologyQuickGO ontologyBLASTP
4316124333121701ABC transporter ATPase componentQuickGO ontologyBLASTP
433309434136828nickelcobalt uptake ABC transporter permease component NiCoTQuickGO ontologyBLASTP
434102434266165predicted ORFQuickGO ontology
4344884356211134enolase superfamily protein N-acylamino acid racemase mandelate racemasemuconate lactonizing enzyme o-succinylbenzoate synthaseQuickGO ontologyBLASTP
4364514382651815beta-N-acetylhexosaminidaseQuickGO ontologyBLASTP
438735439646912transposase IS30QuickGO ontologyBLASTP
439988440638651Resolvase N-terminal helix-turn-helix regionQuickGO ontologyBLASTP
440644440928285predicted ORFQuickGO ontologyBLASTP
440992441147156predicted ORFQuickGO ontology
441189441524336hypothetical protein
442192442404213predicted ORFQuickGO ontologyBLASTP
4428754439541080sortase A and B peptidase C60 Srt2QuickGO ontologyBLASTP
4440284450321005predicted ORFQuickGO ontology
445035445760726predicted ORFQuickGO ontology
4457534484402688von Willebrand factor vWF domain containing proteinQuickGO ontologyBLASTP
4485814495971017transposase IS30QuickGO ontologyBLASTP
450276450833558hypothetical proteinBLASTP
450928451500573hypothetical proteinBLASTP
451522451797276predicted ORFQuickGO ontologyBLASTP
4518724536591788predicted ORFQuickGO ontologyBLASTP
4536564557462091predicted ORFQuickGO ontologyBLASTP
4558644572791416transposase IS5QuickGO ontologyBLASTP
457654457905252transposase A of IS981QuickGO ontologyBLASTP
457959458750792transposase B of IS981QuickGO ontologyBLASTP
459084459932849transposase IS3 OrfBQuickGO ontologyBLASTP
460536460799264hypothetical protein
4608594636812823cation-transporting ATPase E1-E2 family proteinQuickGO ontologyBLASTP
463990464310321transposase tnp4QuickGO ontologyBLASTP
464307464777471transposase IS4QuickGO ontologyBLASTP
4647864659401155Na H antiporter NapA inosine-dependent germinationQuickGO ontologyBLASTP
466447466917471transposase IS4QuickGO ontologyBLASTP
466914467234321transposase tnp4QuickGO ontologyBLASTP
467284467958675transposaseQuickGO ontologyBLASTP