Pre_GI Gene

Host: NC_013716:3109700 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013716:3109700 Citrobacter rodentium ICC168, complete genome

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
3109700312121611517putative fimbrial adhesinQuickGO ontologyBLASTP
31211913121478288hypothetical proteinBLASTP
31214673121664198hypothetical proteinBLASTP
31222263122384159hypothetical protein
31224393123194756hypothetical proteinBLASTP
31231993123573375hypothetical proteinBLASTP
31238833124323441BLASTP
31243663125334969IS102 transposaseQuickGO ontologyBLASTP
31255103125701192hypothetical protein
31257073125970264hypothetical proteinBLASTP
31259703126149180hypothetical proteinBLASTP
31264093126609201hypothetical protein
31269373127629693quorum sensing transcriptional regulator CroRQuickGO ontologyBLASTP
31276453128280636N-acyl homoserine lactone synthase CroIQuickGO ontologyBLASTP
31283643128504141hypothetical protein
31286533128961309hypothetical protein
31290213129791771hypothetical proteinBLASTP
31303113130673363hypothetical protein
31307183131137420hypothetical protein
313122631361394914large repetitive proteinQuickGO ontologyBLASTP
313631631378121497putative outer membrane efflux protein of T1SSQuickGO ontologyBLASTP
313782631399612136putative ATP-binding protein of T1SSQuickGO ontologyBLASTP
314002631413061281putative membrane fusion protein of T1SSQuickGO ontologyBLASTP
31426723143481810ISEc14 transposase BQuickGO ontologyBLASTP
31435233143807285ISEc14 transposase AQuickGO ontologyBLASTP
314428131454771197T3SS effector protein EspGQuickGO ontologyBLASTP
31456213146439819LEE-associated conserved hypothetical proteinQuickGO ontologyBLASTP
31468813147786906T3SS effector protein EspFQuickGO ontologyBLASTP
31479653148261297T3SS componentQuickGO ontologyBLASTP
31482683148489222T3SS structural protein EscFQuickGO ontologyBLASTP
31485263148933408T3SS chaperone CesD2QuickGO ontologyBLASTP
31489403149905966T3SS effector protein EspBQuickGO ontologyBLASTP