Pre_GI Gene

Host: NC_013716:5201097 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013716:5201097 Citrobacter rodentium ICC168, complete genome

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
520109752028301734single-stranded DNA-specific exonucleaseQuickGO ontologyBLASTP
520403052055471518lysyl-tRNA synthetaseQuickGO ontologyBLASTP
52056255206170546isopentenyl-diphosphate delta-isomeraseQuickGO ontologyBLASTP
52064445207193750putative cell wall degradation proteinQuickGO ontologyBLASTP
520746252091021641putative integraseQuickGO ontologyBLASTP
52091035209732630hypothetical proteinBLASTP
52109585211287330hypothetical proteinBLASTP
52119095212505597putative site-specific DNA recombinaseQuickGO ontologyBLASTP
52127735212901129hypothetical protein
52132205213525306hypothetical protein
52136285213909282hypothetical protein
52139025214195294hypothetical protein
52166655217015351hypothetical proteinBLASTP
52170385217226189hypothetical proteinBLASTP
52195915219788198hypothetical proteinBLASTP
52198055220293489hypothetical proteinBLASTP
52202905220667378hypothetical proteinBLASTP
52207565221124369hypothetical proteinBLASTP
52211745221818645hypothetical proteinBLASTP
52218375222058222hypothetical proteinBLASTP
52221215222612492putative DNA repair proteinQuickGO ontologyBLASTP
52226135223098486putative antirestriction proteinQuickGO ontologyBLASTP
52231895224007819hypothetical proteinBLASTP
522433452271802847putative adhesin autotransporterQuickGO ontologyBLASTP
52275535228464912putative GTP-binding proteinQuickGO ontologyBLASTP
522853552295391005hypothetical proteinBLASTP
52308785231018141hypothetical protein
52310505231649600hypothetical proteinBLASTP
52317085231914207puative transcriptional regulatorQuickGO ontologyBLASTP
52326155232827213putative haemolysin expression regulatory proteinQuickGO ontologyBLASTP
52328855233031147hypothetical protein
52330715233316246hypothetical proteinBLASTP
52334785234047570hypothetical proteinBLASTP
52343025234691390hypothetical proteinBLASTP
52353985235697300IS3 transposase AQuickGO ontologyBLASTP
52356945236560867IS3 transposase BQuickGO ontologyBLASTP
52366695237292624hypothetical proteinBLASTP
52373885237621234hypothetical proteinBLASTP
52380365238236201hypothetical protein
523852052401721653putative haemolysin activator HlyBQuickGO ontologyBLASTP
52401825240709528putative haemolysin activator HlyCQuickGO ontologyBLASTP
524072552495538829putative haemolysinhaemagglutininQuickGO ontologyBLASTP
52495405250001462hypothetical protein
52502145250549336hypothetical proteinBLASTP
52505795251151573hypothetical proteinBLASTP
52512505251609360hypothetical proteinBLASTP
52516325251982351hypothetical proteinBLASTP
52525255253100576putative virulence-related outer membrane proteinQuickGO ontologyBLASTP
525320952550231815putative DNA helicaseQuickGO ontologyBLASTP
52550895255394306hypothetical protein
525705252586681617hypothetical proteinBLASTP
525880052605841785putative P-loop ATPase family proteinQuickGO ontologyBLASTP
52605845261336753hypothetical proteinBLASTP
526131852626371320putative DNA binding proteinQuickGO ontologyBLASTP
52626345263359726putative deoxyribonucleaseQuickGO ontologyBLASTP
52635815263778198hypothetical proteinBLASTP
526394852655191572IS679 transposase CQuickGO ontologyBLASTP
52655395265886348IS679 transposase BQuickGO ontologyBLASTP
52658865266536651IS679 transposase AQuickGO ontologyBLASTP
52666475267198552hypothetical proteinBLASTP
526720652685341329hypothetical proteinBLASTP
52686725269112441BLASTP
52691675269469303BLASTP
52694825269871390BLASTP
52699065270046141BLASTP
527025252715141263integraseQuickGO ontologyBLASTP
5271715527178773tRNA-PheQuickGO ontologyBLASTP
52718935272600708hypothetical proteinBLASTP
527302652751612136ornithine decarboxylase constitutiveQuickGO ontologyBLASTP
527532652765821257nucleoside permeaseQuickGO ontologyBLASTP