Pre_GI Gene

Host: NC_013929:5248000 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013929:5248000 Streptomyces scabiei 87.22 chromosome, complete genome

Host Lineage: Streptomyces scabiei; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a soil bacterium which is the causative agent of scab disease and affects a variety of underground vegetables such as potato and radish. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
52480325248652621hypothetical proteinBLASTP
52489085249897990hypothetical proteinBLASTP
52500495250591543ATP-binding proteinQuickGO ontologyBLASTP
52510305251839810phosphodiesteraseQuickGO ontologyBLASTP
525209452539021809proteaseQuickGO ontologyBLASTP
52540255254615591hypothetical protein
5254685525476985tRNA-SerQuickGO ontologyBLASTP
525755852593241767integraseQuickGO ontologyBLASTP
52593655259811447hypothetical protein
52598345260226393hypothetical proteinBLASTP
52602205260648429hypothetical proteinBLASTP
52606955261102408NUDIX hydrolaseQuickGO ontologyBLASTP
52612105261998789transcriptional regulatorQuickGO ontologyBLASTP
52621675262523357replication activator proteinQuickGO ontologyBLASTP
526252352638991377plasmid transfer proteinQuickGO ontologyBLASTP
52639885264641654mobile element transfer proteinQuickGO ontologyBLASTP
52646625264844183hypothetical protein
52648445265029186mobile element transfer proteinQuickGO ontologyBLASTP
52650545265248195hypothetical proteinBLASTP
52652745265519246hypothetical protein
526555852669581401BLASTP
52669555267167213excisionaseQuickGO ontologyBLASTP
526716752683091143prophage integraseQuickGO ontologyBLASTP
52683605268815456hypothetical proteinBLASTP
52691835270043861hypothetical proteinBLASTP