Pre_GI Gene

Host: NC_014323:3669704 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_014323:3669704 Herbaspirillum seropedicae SmR1 chromosome, complete genome

Host Lineage: Herbaspirillum seropedicae; Herbaspirillum; Oxalobacteraceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Root-associated nitrogen-fixing bacterium. Herbaspirillum seropedicae is an endophitic nitrogen-fixing beta-Proteobacteria found associated with important crops such as sugarcane, wheat, maize, rice and sorghum. It is non-phytopathogenic and produces interesting biotechnological products such as polybetaalkanoates and cyanophycin. Herbaspirillum seropedicae was isolated from the roots of rice plants, and is member of a group of free-living soil bacteria known to promote plant growth. The yields of rice and sorghum were significantly increased when grown in soil inoculated with Herbaspirillum seropedicae.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
366970436711551452oxygen-independent coproporphyrinogen III oxidaseQuickGO ontologyBLASTP
36714223671697276hypothetical protein
36721483673071924drugmetabolite transporter DMT superfamily permeaseQuickGO ontologyBLASTP
36732293673885657membrane proteinQuickGO ontologyBLASTP
367398836751451158arabinose efflux permeaseQuickGO ontologyBLASTP
367521736764191203acetylornithine deacetylaseQuickGO ontologyBLASTP
36764163676610195hypothetical protein
36768093677273465sensory transduction regulatory proteinQuickGO ontologyBLASTP
36773403677627288hypothetical protein
367785636788961041GGDEF domain-containing proteinQuickGO ontologyBLASTP
36790733679864792hypothetical proteinBLASTP
36804453681404960hypothetical protein
368170836827901083hypothetical protein
36833143683880567ADP-ribose pyrophosphataseQuickGO ontologyBLASTP
36838953684638744leucylphenylalanyl-tRNA-protein transferaseQuickGO ontologyBLASTP
36847763685504729arginyl-tRNAprotein arginylyltransferaseQuickGO ontologyBLASTP
368566736867311065dihydroorotate dehydrogenaseQuickGO ontologyBLASTP
36868743687113240hypothetical protein
36872063687805600cation transport regulator proteinQuickGO ontologyBLASTP
36878323688263432hypothetical protein
36883203688694375hypothetical protein
36886963688869174hypothetical protein
36889543689085132hypothetical protein
36891813690029849lysophospholipaseQuickGO ontologyBLASTP
369002636914771452hypothetical proteinBLASTP
36915543692363810transmembrane proteinQuickGO ontologyBLASTP