Pre_GI Gene

Host: NC_014323:3976351 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_014323:3976351 Herbaspirillum seropedicae SmR1 chromosome, complete genome

Host Lineage: Herbaspirillum seropedicae; Herbaspirillum; Oxalobacteraceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Root-associated nitrogen-fixing bacterium. Herbaspirillum seropedicae is an endophitic nitrogen-fixing beta-Proteobacteria found associated with important crops such as sugarcane, wheat, maize, rice and sorghum. It is non-phytopathogenic and produces interesting biotechnological products such as polybetaalkanoates and cyanophycin. Herbaspirillum seropedicae was isolated from the roots of rice plants, and is member of a group of free-living soil bacteria known to promote plant growth. The yields of rice and sorghum were significantly increased when grown in soil inoculated with Herbaspirillum seropedicae.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
39763513977022672ribose 5-phosphate isomeraseQuickGO ontologyBLASTP
397712339788861764Kef-type K transport system membrane component proteinQuickGO ontologyBLASTP
39794103979922513transcription regulator proteinQuickGO ontologyBLASTP
398012839812701143branched-chain amino acid ABC transporter periplasmic proteinQuickGO ontologyBLASTP
39814113981737327plasmid stabilization system proteinQuickGO ontologyBLASTP
39817783982515738hypothetical protein
39828743983362489SOS mutagenesis and repair proteinQuickGO ontologyBLASTP
39833593983784426SOS mutagenesis proteinQuickGO ontologyBLASTP
398439439860581665hypothetical proteinBLASTP
398629239886222331subtilisin-like serine proteaseQuickGO ontologyBLASTP
398859439897631170AAA class ATPaseQuickGO ontologyBLASTP
39904873991158672hypothetical protein
39912323991555324hypothetical protein
39917403992075336hypothetical protein
39921313992367237MoxR-like ATPaseQuickGO ontology
39925403992890351hypothetical protein
39930703993303234hypothetical protein
39933883993594207hypothetical protein
39937023994043342hypothetical protein
39941323994551420hypothetical protein
39946523995035384hypothetical protein
39950923995469378hypothetical protein
39955203995876357hypothetical proteinBLASTP
39961873996531345hypothetical protein
39966323996919288hypothetical protein
399872540003531629methyl-accepting chemotaxis transducer transmembrane proteinQuickGO ontologyBLASTP
40005394000886348hypothetical protein
40009544001847894transcription regulator proteinQuickGO ontologyBLASTP
40019564002888933nucleoside-diphosphate-sugar epimeraseQuickGO ontologyBLASTP
40030324003766735hypothetical protein
40040414004694654hypothetical protein
40048484004988141hypothetical protein
40051524005592441hypothetical protein
40057414006313573transcription regulator proteinQuickGO ontologyBLASTP
40063864007141756short-chain alcohol dehydrogenaseQuickGO ontologyBLASTP
40072334007799567TetR family transcription regulator proteinQuickGO ontologyBLASTP
400788740089151029NADPHquinone oxidoreductaseQuickGO ontologyBLASTP
40089214009274354hypothetical proteinBLASTP
4009351401042710772-nitropropane dioxygenaseQuickGO ontologyBLASTP
401055940116621104transcription regulator proteinQuickGO ontologyBLASTP
401175140127581008AraC family transcription regulator proteinQuickGO ontologyBLASTP
40128294013725897thioredoxin reductaseQuickGO ontologyBLASTP
40138254014268444transcription regulator proteinQuickGO ontologyBLASTP
401448440166942211hypothetical proteinBLASTP
40169424017319378two component response regulator proteinQuickGO ontologyBLASTP
401746840186731206two component sensor histidine kinaseQuickGO ontologyBLASTP
40187264019565840hypothetical proteinBLASTP
40195584019887330transcription regulator proteinQuickGO ontologyBLASTP
40202664021225960transcription regulator proteinQuickGO ontologyBLASTP
402119740222491053hypothetical proteinBLASTP
40222394022961723glutamine ABC transporter ATPaseQuickGO ontologyBLASTP
40230064023662657glutamine ABC transporter permeaseQuickGO ontologyBLASTP
40236934024442750glutamine ABC transportersignal transduction system periplasmic proteinQuickGO ontologyBLASTP
40248904025624735glutamateaspartate ABC transporter ATPaseQuickGO ontologyBLASTP
40256214026304684glutamateaspartate ABC transporter permeaseQuickGO ontologyBLASTP
40263164027041726glutamateaspartate ABC transporter permeaseQuickGO ontologyBLASTP
402706340276385764-carboxymuconolactone decarboxylase domain-containing proteinQuickGO ontologyBLASTP
40276774028594918amino acid ABC transportersignal transduction system periplasmic proteinQuickGO ontologyBLASTP
402863240299541323aminotransferase class III proteinQuickGO ontologyBLASTP
40302874031168882transcription regulator proteinQuickGO ontologyBLASTP
403142540329991575methyl-accepting chemotaxis protein IQuickGO ontologyBLASTP
40330394033311273hypothetical protein
40336894034684996AraC family transcription regulator proteinQuickGO ontologyBLASTP
403541640367771362hypothetical proteinBLASTP
403681840385091692hypothetical proteinBLASTP