Pre_GI Gene

Host: NC_016822:1431200 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_016822:1431200 Shigella sonnei 53G, complete genome

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
14312001431703504YbaKprolyl-tRNA synthetase associated domain-containing proteinQuickGO ontologyBLASTP
143174614331341389diguanylate cyclaseQuickGO ontologyBLASTP
14332281433731504IS1 ORF2QuickGO ontologyBLASTP
14336501433925276IS1 repressor protein InsAQuickGO ontologyBLASTP
143419314356681476hypothetical proteinBLASTP
143581514370981284hypothetical proteinBLASTP
143721114391451935PrkA family serine protein kinaseQuickGO ontologyBLASTP
143927614411591884hypothetical proteinBLASTP
14414551441856402hypothetical protein
14422951442480186hypothetical protein
14424701442772303hypothetical protein
14428271443381555endodeoxyribonucleaseQuickGO ontologyBLASTP
14435031443964462hypothetical protein
14444281445171744endonucleaseQuickGO ontologyBLASTP
14452541445727474hypothetical proteinBLASTP
14459841446652669hypothetical proteinBLASTP
14467851447096312hypothetical proteinBLASTP
14472891447555267hypothetical protein
14475941448391798IS21 ORF2QuickGO ontologyBLASTP
144839114495631173integrase for IS21 orfAQuickGO ontologyBLASTP
14496661449974309hypothetical proteinBLASTP
14499801450342363hypothetical protein
14503621450619258hypothetical protein
14507251451165441hypothetical protein
14518331452396564hypothetical proteinBLASTP
14524321452977546hypothetical proteinBLASTP
14533061454211906IS2 transposase TnpBQuickGO ontologyBLASTP
14541691454534366IS2 repressor TnpAQuickGO ontologyBLASTP
145466614561261461hypothetical proteinBLASTP
14561381456668531hypothetical protein
145666814581761509hypothetical proteinBLASTP
145812414599681845hypothetical proteinBLASTP
14599821460305324hypothetical proteinBLASTP
14603071460699393hypothetical proteinBLASTP
146071714633682652hypothetical proteinBLASTP
14634271463900474hypothetical proteinBLASTP
14639521464251300hypothetical proteinBLASTP
14642841464646363hypothetical proteinBLASTP
146463614668492214hypothetical proteinBLASTP
14674341467991558hypothetical proteinBLASTP
14679911468614624hypothetical proteinBLASTP
14686141469018405hypothetical proteinBLASTP
14690111469526516hypothetical proteinBLASTP
14696151469980366IS2 repressor TnpAQuickGO ontologyBLASTP
14699381470843906IS2 transposase TnpBQuickGO ontologyBLASTP
147102514731692145hypothetical proteinBLASTP
14731751474014840IS911 orfAQuickGO ontologyBLASTP
14740411474343303IS911 orf1QuickGO ontologyBLASTP
14744491474901453hypothetical proteinBLASTP
14750591475355297hypothetical proteinBLASTP
14753571476013657hypothetical proteinBLASTP
14760641476336273hypothetical proteinBLASTP
14763751476824450hypothetical proteinBLASTP
14768611477295435hypothetical proteinBLASTP
14773051477883579hypothetical proteinBLASTP
14778801478191312hypothetical proteinBLASTP
14781881478481294hypothetical proteinBLASTP
14785421479336795hypothetical proteinBLASTP
14794471479818372hypothetical protein
14798981480578681hypothetical proteinBLASTP
14810711481817747MltA-interacting MipA family proteinQuickGO ontologyBLASTP
14819071482761855aldehyde reductaseQuickGO ontologyBLASTP
14828121483696885aldose 1-epimeraseQuickGO ontologyBLASTP
14837801484775996glyceraldehyde-3-phosphate dehydrogenaseQuickGO ontologyBLASTP
14851171485530414methionine sulfoxide reductase BQuickGO ontologyBLASTP
14855721485844273hypothetical proteinBLASTP
14860051486646642nicotinamidasepyrazinamidaseQuickGO ontologyBLASTP
148665714876731017asparaginaseQuickGO ontologyBLASTP
148784014896961857protease 4QuickGO ontologyBLASTP
14898571490408552putative oxidoreductaseQuickGO ontologyBLASTP
149052514915681044selenophosphate synthetaseQuickGO ontologyBLASTP
149157314935341962DNA topoisomerase IIIQuickGO ontologyBLASTP