Pre_GI Gene

Host: NC_016822:2201388 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_016822:2201388 Shigella sonnei 53G, complete genome

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
22013882202203816mannosyl-3-phosphoglycerate phosphataseQuickGO ontologyBLASTP
220220022038941695diguanylate cyclaseQuickGO ontologyBLASTP
22040652204247183hypothetical proteinBLASTP
22043262205243918hypothetical proteinBLASTP
22054162205775360putative DMT superfamily transporter inner membrane proteinQuickGO ontologyBLASTP
22057952206337543putative DMT superfamily transporter inner membrane proteinQuickGO ontologyBLASTP
22063262206796471very short patch repair proteinQuickGO ontologyBLASTP
220677722081951419DNA cytosine methylaseQuickGO ontologyBLASTP
22082622208918657putative hydrolaseQuickGO ontologyBLASTP
22089582209323366hypothetical proteinBLASTP
22098902210717828putative outer membrane pore proteinQuickGO ontologyBLASTP
22107462211021276IS1 repressor protein InsAQuickGO ontologyBLASTP
22109402211443504IS1 ORF2QuickGO ontologyBLASTP
22114652211830366putative outer membrane pore proteinQuickGO ontologyBLASTP
22118642212274411hypothetical proteinBLASTP
22124212213272852chaperone protein HchAQuickGO ontologyBLASTP
2213380221473813592-component sensor proteinQuickGO ontologyBLASTP
22147382215409672transcriptional regulatory protein YedWQuickGO ontologyBLASTP
22155422215955414hydroxyisourate hydrolaseQuickGO ontologyBLASTP
221606422170681005TMAODMSO reductaseQuickGO ontologyBLASTP
22170692217704636putative sulfite oxidase subunit YedZQuickGO ontologyBLASTP
22179612218611651zinccadmium-binding proteinQuickGO ontologyBLASTP
22189542219376423cytochromeQuickGO ontologyBLASTP
2220054222014390tRNA-SerQuickGO ontologyBLASTP
22202372221034798DgsA anti-repressor MtfAQuickGO ontologyBLASTP
2221135222121076tRNA-AsnQuickGO ontologyBLASTP
222569122285882898factorQuickGO ontologyBLASTP
222885022299021053glycosyl transferase family proteinQuickGO ontologyBLASTP
223021722312541038shikimate transporterQuickGO ontologyBLASTP
22312832231558276IS1 repressor protein InsAQuickGO ontologyBLASTP
22314772231980504IS1 ORF2QuickGO ontologyBLASTP
22321152233065951transcriptional regulator CblQuickGO ontologyBLASTP
2233103223317876tRNA-AsnQuickGO ontologyBLASTP
223318622348261641MATE family multidrug exporterQuickGO ontologyBLASTP
2234927223500276tRNA-AsnQuickGO ontologyBLASTP
22354552236171717hypothetical proteinBLASTP
223650222379561455AMP nucleosidaseQuickGO ontologyBLASTP
22380582238324267shikimate transporterQuickGO ontologyBLASTP
22383882238891504IS1 ORF2QuickGO ontologyBLASTP
22388102239085276IS1 repressor protein InsAQuickGO ontologyBLASTP
22391142240049936nitrogen assimilation transcriptional regulatorQuickGO ontologyBLASTP
2240376224045176tRNA-AsnQuickGO ontologyBLASTP
22405072241439933LD-transpeptidaseQuickGO ontologyBLASTP
224150422425831080nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferaseQuickGO ontologyBLASTP
22425952243338744cobalamin synthaseQuickGO ontologyBLASTP
22433352243880546adenosylcobinamide kinaseadenosylcobinamide-phosphate guanylyltransferaseQuickGO ontologyBLASTP
22440142244451438hypothetical proteinBLASTP