Pre_GI Gene

Host: NC_017328 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_017328:1075535 Shigella flexneri 2002017 chromosome, complete genome

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
107553510766621128protein ycdO precursorQuickGO ontologyBLASTP
107666810779331266Peroxidase ycdB precursorQuickGO ontologyBLASTP
10784051079328924PhoB-dependent ATP-binding pho regulon componentQuickGO ontologyBLASTP
10803021080610309Transposase insE for insertion sequence IS3QuickGO ontologyBLASTP
10807041081084381putative acyl-carrier-protein S-malonyltransferaseQuickGO ontologyBLASTP
10811931082179987hypothetical proteinBLASTP
108254610837631218putative P4-family integraseQuickGO ontologyBLASTP
108407910854611383CP4-57 prophage hypothetical proteinQuickGO ontologyBLASTP
10854331085738306putative transcriptional regulatorQuickGO ontologyBLASTP
108614010876571518hypothetical proteinBLASTP
10890321089595564hypothetical proteinBLASTP
10903781090674297hypothetical proteinBLASTP
10910831091529447IS629 ORF2QuickGO ontologyBLASTP
109164610931691524Reverse transcriptase-like proteinQuickGO ontologyBLASTP
10931231093548426hypothetical proteinBLASTP
10935831093834252hypothetical proteinBLASTP
10937611094240480IS629 orfBQuickGO ontologyBLASTP
10942401094566327IS629 orfAQuickGO ontologyBLASTP
10947411095034294putative transposaseQuickGO ontologyBLASTP
10950851095303219TetR family transcriptional regulatorQuickGO ontologyBLASTP
10953611095669309Transposase insE for insertion sequence IS3QuickGO ontologyBLASTP
10956661096532867IS3 transposase orfBQuickGO ontologyBLASTP
109681210980891278hypothetical proteinBLASTP
109815211001491998putative Choline-glycine betaine transporterQuickGO ontologyBLASTP
11003031101121819ISSd1 transposase orfAB fusionQuickGO ontologyBLASTP
11016231102567945Lipid A biosynthesis KDO2-Lauroyl-lipid IVA acyltransferaseQuickGO ontologyBLASTP
11026321103582951VirK-like proteinQuickGO ontologyBLASTP
11035871104069483putative glycosyl transferase group 1 family proteinQuickGO ontologyBLASTP
11040921104595504Insertion element IS1 4 protein insBQuickGO ontologyBLASTP
11048481105264417putative transcriptional regulator TetDQuickGO ontologyBLASTP
11053521105945594Transposon Tn10 tetC proteinQuickGO ontologyBLASTP
110605811072631206Tetracycline resistance protein class B TetAB Metal- tetracyclineH antiporterQuickGO ontologyBLASTP
11073421107968627Tetracycline repressor protein class B from transposon Tn10QuickGO ontologyBLASTP
11083511108854504Insertion element IS1 4 protein insBQuickGO ontologyBLASTP
11091841109975792Streptomycin adenyltransferaseQuickGO ontologyBLASTP
11100881110918831OxacillinaseQuickGO ontologyBLASTP
111112811121411014IntegraserecombinaseQuickGO ontologyBLASTP
11121101112694585Urf2 proteinQuickGO ontologyBLASTP
11128201113380561Transposon Tn21 resolvaseQuickGO ontologyBLASTP
111338311163492967TnpA transposaseQuickGO ontologyBLASTP
11164161116793378GNAT family acetyltransferaseQuickGO ontologyBLASTP
11169941117653660Chloramphenicol acetyltransferaseQuickGO ontologyBLASTP
11182291118630402IS1 transposaseQuickGO ontologyBLASTP
11187471119373627Tetracycline repressor protein class B from transposon Tn10QuickGO ontologyBLASTP
111945211206571206Tetracycline resistance protein class B TetAB Metal- tetracyclineH antiporterQuickGO ontologyBLASTP