Pre_GI Gene

Host: NC_017357:495213 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_017357:495213 Helicobacter pylori 908 chromosome, complete genome

Host Lineage: Helicobacter pylori; Helicobacter; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This genus consists of organisms that colonize the mucosal layer of the gastrointestinal tract or are found enterohepatically (in the liver). It was only recently discovered (1983) by two Australians (Warren and Marshall) that this organism was associated with peptic ulcers. It is one of the most common chronic infectious organisms, and is found in half the world's population. This organism attacks the gastric epithilial surface, resulting in chronic gastritis, and can cause more severe diseases including those that lead to gastric carcinomas and lymphomas, peptic ulcers, and severe diarrhea. It is an extracellular pathogen that persists in the gastric environment, which has a very low pH, by production of the urease enzyme, which converts urea to ammonia and carbon dioxide, a process which can counteract the acidic environment by production of a base. The toxins include cytolethal distending toxin, vacuolating cytotoxin (VacA) that induces host epithelial cell apopoptosis (cell death), and the cytotoxin associated antigen (CagA) which results in alteration to the host cell signalling pathways. The CagA protein is translocated into host cells by a type IV secretion system encoded by the cag pathogenicity island.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
495213496118906GTP-binding proteinQuickGO ontologyBLASTP
496115497107993hypothetical proteinBLASTP
497189498043855hypothetical proteinBLASTP
498315498662348cag pathogenicity island proteinQuickGO ontologyBLASTP
498805499464660cag island proteinQuickGO ontologyBLASTP
4994575009021446cag pathogenicity island proteinQuickGO ontologyBLASTP
500912501421510cag island proteinQuickGO ontologyBLASTP
501702501824123hypothetical proteinBLASTP
5018985041442247type IV secretion proteinQuickGO ontologyBLASTP
504153505145993ATPase like proteinQuickGO ontologyBLASTP
505150505749600cag pathogenicity island proteinQuickGO ontologyBLASTP
5058855075881704cag pathogenicity island proteinQuickGO ontologyBLASTP
507545507706162cag pathogenicity island proteinQuickGO ontologyBLASTP
507751508416666cag pathogenicity island proteinQuickGO ontologyBLASTP
508565508897333cag pathogenicity island proteinQuickGO ontologyBLASTP
5089165103641449cag island proteinQuickGO ontologyBLASTP
510534511166633cag pathogenicity island proteinQuickGO ontologyBLASTP
5111265122951170cag pathogenicity island proteinQuickGO ontologyBLASTP
512300513058759cag pathogenicity island proteinQuickGO ontologyBLASTP
513439514095657cag pathogenicity island proteinQuickGO ontologyBLASTP
514131514973843cag pathogenicity island proteinQuickGO ontologyBLASTP
515155515754600cag pathogenicity island proteinQuickGO ontologyBLASTP
516179516382204cag pathogenicity island proteinQuickGO ontologyBLASTP
5179445190741131cag island proteinQuickGO ontologyBLASTP