Pre_GI Gene

Host: NC_017360:1052473 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_017360:1052473 Helicobacter pylori 35A chromosome, complete genome

Host Lineage: Helicobacter pylori; Helicobacter; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This genus consists of organisms that colonize the mucosal layer of the gastrointestinal tract or are found enterohepatically (in the liver). It was only recently discovered (1983) by two Australians (Warren and Marshall) that this organism was associated with peptic ulcers. It is one of the most common chronic infectious organisms, and is found in half the world's population. This organism attacks the gastric epithilial surface, resulting in chronic gastritis, and can cause more severe diseases including those that lead to gastric carcinomas and lymphomas, peptic ulcers, and severe diarrhea. It is an extracellular pathogen that persists in the gastric environment, which has a very low pH, by production of the urease enzyme, which converts urea to ammonia and carbon dioxide, a process which can counteract the acidic environment by production of a base. The toxins include cytolethal distending toxin, vacuolating cytotoxin (VacA) that induces host epithelial cell apopoptosis (cell death), and the cytotoxin associated antigen (CagA) which results in alteration to the host cell signalling pathways. The CagA protein is translocated into host cells by a type IV secretion system encoded by the cag pathogenicity island.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
10524731052610138hypothetical protein
10527761053375600CAG pathogenicity island protein 13QuickGO ontologyBLASTP
10535771054419843CAG pathogenicity island protein 12QuickGO ontologyBLASTP
10544321055082651cag pathogenicity island proteinQuickGO ontologyBLASTP
10553561056114759cag pathogenicity island proteinQuickGO ontologyBLASTP
105611910577261608cag pathogenicity island proteinQuickGO ontologyBLASTP
105777910593471569cag pathogenicity island proteinQuickGO ontologyBLASTP
105936210647555394cag pathogenicity island proteinQuickGO ontologyBLASTP
10647451064879135hypothetical proteinBLASTP
10648921065491600cag pathogenicity island proteinQuickGO ontologyBLASTP
10654961066488993P-type DNA transfer ATPase VirB11QuickGO ontologyBLASTP
106649710687432247cag pathogenicity island proteinQuickGO ontologyBLASTP
10690511069560510cag pathogenicity island proteinQuickGO ontologyBLASTP
106957010710151446cag pathogenicity island proteinQuickGO ontologyBLASTP
10710311071228198cag pathogenicity island protein cage cag2QuickGO ontologyBLASTP
10712441071591348cag pathogenicity island proteinQuickGO ontologyBLASTP
10717021072574873Sel1 repeat superfamily proteinQuickGO ontologyBLASTP
10726441073636993hypothetical proteinBLASTP
10736331074538906GTP-binding protein EraQuickGO ontologyBLASTP
107453810758691332ATP-dependent hsl protease ATP-binding subunit HslUQuickGO ontologyBLASTP
10758691076411543ATP-dependent protease HslVUQuickGO ontologyBLASTP
1076415107686445050S ribosomal protein L9QuickGO ontologyBLASTP
107692710791012175hypothetical protein DUF262QuickGO ontologyBLASTP