Pre_GI Gene

Host: NC_017365:848500 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_017365:848500 Helicobacter pylori F30, complete genome

Host Lineage: Helicobacter pylori; Helicobacter; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This genus consists of organisms that colonize the mucosal layer of the gastrointestinal tract or are found enterohepatically (in the liver). It was only recently discovered (1983) by two Australians (Warren and Marshall) that this organism was associated with peptic ulcers. It is one of the most common chronic infectious organisms, and is found in half the world's population. This organism attacks the gastric epithilial surface, resulting in chronic gastritis, and can cause more severe diseases including those that lead to gastric carcinomas and lymphomas, peptic ulcers, and severe diarrhea. It is an extracellular pathogen that persists in the gastric environment, which has a very low pH, by production of the urease enzyme, which converts urea to ammonia and carbon dioxide, a process which can counteract the acidic environment by production of a base. The toxins include cytolethal distending toxin, vacuolating cytotoxin (VacA) that induces host epithelial cell apopoptosis (cell death), and the cytotoxin associated antigen (CagA) which results in alteration to the host cell signalling pathways. The CagA protein is translocated into host cells by a type IV secretion system encoded by the cag pathogenicity island.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
848676849275600cag pathogenicity island proteinQuickGO ontologyBLASTP
849477850319843cag pathogenicity island proteinQuickGO ontologyBLASTP
850335850982648cag pathogenicity island proteinQuickGO ontologyBLASTP
851257852015759cag pathogenicity island proteinQuickGO ontologyBLASTP
8520208536271608cag pathogenicity island proteinQuickGO ontologyBLASTP
8536808552451566cag pathogenicity island proteinQuickGO ontologyBLASTP
8552608610405781cag pathogenicity island proteinQuickGO ontologyBLASTP
861177861776600cag pathogenicity island proteinQuickGO ontologyBLASTP
861781862773993cag pathogenicity island proteinQuickGO ontologyBLASTP
8627828650282247cag pathogenicity island proteinQuickGO ontologyBLASTP
865335865844510cag island proteinQuickGO ontologyBLASTP
8658548672991446cag pathogenicity island proteinQuickGO ontologyBLASTP
867527867874348cag pathogenicity island proteinQuickGO ontologyBLASTP
868017868580564hypothetical proteinBLASTP
868577868864288hypothetical proteinBLASTP
868927869919993hypothetical proteinBLASTP
869916870821906GTP-binding protein EraQuickGO ontologyBLASTP
8708218721521332ATP-dependent protease ATP-binding subunitQuickGO ontologyBLASTP
872152872694543ATP-dependent protease peptidase subunitQuickGO ontologyBLASTP
87269887314745050S ribosomal protein L9QuickGO ontologyBLASTP