Pre_GI Gene

Host: NC_003197:1471349 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003197:1471349 Salmonella typhimurium LT2, complete genome

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
147134914731271779sensory histidine kinaseQuickGO ontologyBLASTP
14730841473722639response regulatorQuickGO ontologyBLASTP
14738201474032213putative cytoplasmic proteinQuickGO ontologyBLASTP
14741281475087960putative inner membrane proteinQuickGO ontologyBLASTP
14752601475988729putative regulatory proteinQuickGO ontologyBLASTP
14761671476805639transcriptional activatorQuickGO ontologyBLASTP
147683614795982763sensor kinaseQuickGO ontologyBLASTP
14799991480400402secreted effector proteinQuickGO ontologyBLASTP
148040214818951494outer membrane secretin precursorQuickGO ontologyBLASTP
148187614830871212virulence proteinQuickGO ontologyBLASTP
14830951483337243secretion system effectorQuickGO ontologyBLASTP
14836011483927327secretion system chaperone proteinQuickGO ontologyBLASTP
14839341484524591translocation machinery componentQuickGO ontologyBLASTP
14845211484994474secretion system chaparoneQuickGO ontologyBLASTP
148499714864511455translocation machinery componentQuickGO ontologyBLASTP
14864671487054588translocation machinery componentQuickGO ontologyBLASTP
14870571487473417secreted effector proteinQuickGO ontologyBLASTP
14875251487959435secretion system chaparoneQuickGO ontologyBLASTP
14879751488757783secreted effector proteinQuickGO ontologyBLASTP
14887541489443690secreted effector proteinQuickGO ontologyBLASTP
14895371489752216type III secretion system apparatus proteinQuickGO ontologyBLASTP
14897931490020228type III secretion system apparatus proteinQuickGO ontologyBLASTP
14900321490280249type III secretion system apparatus proteinQuickGO ontologyBLASTP
14902771491026750needle complex inner membrane lipoproteinQuickGO ontologyBLASTP
14910441491592549putative cytoplasmic proteinQuickGO ontologyBLASTP
14915891492263675type III secretion system apparatus proteinQuickGO ontologyBLASTP
149222914932451017type III secretion system apparatus proteinQuickGO ontologyBLASTP
14933031493671369type III secretion system apparatus proteinQuickGO ontologyBLASTP
149365614957012046type III secretion system apparatus proteinQuickGO ontologyBLASTP
149569114969921302type III secretion system ATPaseQuickGO ontologyBLASTP
14969951497372378type III secretion system apparatus proteinQuickGO ontologyBLASTP
14973531497727375type III secretion system apparatus proteinQuickGO ontologyBLASTP
14977081498676969type III secretion proteinQuickGO ontologyBLASTP
14987441499391648needle complex export proteinQuickGO ontologyBLASTP
14993881499654267type III secretion system apparatus proteinQuickGO ontologyBLASTP
14996551500434780type III secretion system apparatus proteinQuickGO ontologyBLASTP
150043115014891059type III secretion system apparatus proteinQuickGO ontologyBLASTP
1501640150171374tRNA-ValQuickGO ontologyBLASTP
1501727150180074tRNA-ValQuickGO ontologyBLASTP
150196215033351374multidrug efflux protein NorAQuickGO ontologyBLASTP
15035521504193642riboflavin synthase subunit alphaQuickGO ontologyBLASTP
150423515053831149cyclopropane fatty acyl phospholipid synthaseQuickGO ontologyBLASTP
150567315068781206putative transport proteinQuickGO ontologyBLASTP
15069911507923933putative transcriptional regulatorQuickGO ontologyBLASTP
150792015089451026pur regulon transcriptional repressorQuickGO ontologyBLASTP