Pre_GI Gene

Host: NC_003197:3902500 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003197:3902500 Salmonella typhimurium LT2, complete genome

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
390288239039071026L-threonine 3-dehydrogenaseQuickGO ontologyBLASTP
3903917390511311972-amino-3-ketobutyrate coenzyme A ligaseQuickGO ontologyBLASTP
39053163906248933ADP-L-glycero-D-mannoheptose-6-epimeraseQuickGO ontologyBLASTP
390625139072971047ADP-heptose-LPS heptosyltransferase 1QuickGO ontologyBLASTP
39072973908250954heptosyl transferase IQuickGO ontologyBLASTP
390829039095041215O-antigen ligaseQuickGO ontologyBLASTP
390956139107061146putative hexose transferaseQuickGO ontologyBLASTP
39108073911616810lipopolysaccharide core biosynthetic proteinQuickGO ontologyBLASTP
39117663912464699lipopolysaccharide core biosynthetic proteinQuickGO ontologyBLASTP
391248739134971011lipopolysaccharide glucosyltransferaseQuickGO ontologyBLASTP
391351539145281014lipopolysaccharide-alpha-1 3-D-galactosyltransferaseQuickGO ontologyBLASTP
391453439156131080lipopolysaccharide-16-D-galactosyltransferaseQuickGO ontologyBLASTP
39156833915916234putative inner membrane proteinQuickGO ontologyBLASTP
39159483916745798lipopolysaccharide core biosynthetic proteinQuickGO ontologyBLASTP
391673839178621125glucosyltransferase IQuickGO ontologyBLASTP
391785939188931035lipopolysaccharide core biosynthetic proteinQuickGO ontologyBLASTP
3919338392061512783-deoxy-D-manno-octulosonic-acid transferaseQuickGO ontologyBLASTP
39206243921103480phosphopantetheine adenylyltransferaseQuickGO ontologyBLASTP
39211313921940810formamidopyrimidine-DNA glycosylaseQuickGO ontologyBLASTP
3922038392220516850S ribosomal protein L33QuickGO ontologyBLASTP
3922226392246223750S ribosomal protein L28QuickGO ontologyBLASTP
39226803923345666DNA repair protein RadCQuickGO ontologyBLASTP
392351839247411224phosphopantothenoylcysteine synthasedecarboxylaseQuickGO ontologyBLASTP
39247223925177456deoxyuridine 5-triphosphate nucleotidohydrolaseQuickGO ontologyBLASTP
39252853925881597nucleoid occlusion proteinQuickGO ontologyBLASTP
39259593926600642orotate phosphoribosyltransferaseQuickGO ontologyBLASTP
39266793927395717ribonuclease PHQuickGO ontologyBLASTP
39275213928384864putative stress-induced proteinQuickGO ontologyBLASTP