Pre_GI Gene

Host: NC_003366:128783 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003366:128783 Clostridium perfringens str. 13, complete genome

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a type A isolate from the soil. It can establish gas gangrene in a murine experimental model. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
1287831298321050probable dehydrogenaseQuickGO ontologyBLASTP
130202130960759hypothetical proteinBLASTP
131191131967777crotonaseQuickGO ontologyBLASTP
1320701336201551propionate CoA-transferaseQuickGO ontologyBLASTP
1337241348601137acyl-CoA dehydrogenaseQuickGO ontologyBLASTP
135262135612351hypothetical proteinBLASTP
1361901373201131glycerol dehydrogenaseQuickGO ontologyBLASTP
1373461390941749dihydroxyacetone kinaseQuickGO ontologyBLASTP
1394541408871434probable multidrug resistance proteinQuickGO ontologyBLASTP
141164141436273hypothetical protein
141837142790954L-lactate dehydrogenaseQuickGO ontologyBLASTP
1434161445911176hypothetical protein
144710145147438hypothetical protein
145358146098741hypothetical proteinBLASTP
146210147082873hypothetical proteinBLASTP