Pre_GI Gene

Host: NC_003366:332500 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003366:332500 Clostridium perfringens str. 13, complete genome

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a type A isolate from the soil. It can establish gas gangrene in a murine experimental model. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
332724332924201hypothetical proteinBLASTP
3330453343641320hypothetical proteinBLASTP
334577334873297hypothetical proteinBLASTP
335081335758678uracil-DNA glycosylaseQuickGO ontologyBLASTP
3360953386322538probable beta-hexosamidase AQuickGO ontologyBLASTP
3390553405611507BLASTP
34072534079773BLASTP
34080634087974
3409823438852904BLASTP
344003344116114BLASTP
34413234420473
344672345139468probable bacterioferritin comigratory proteinQuickGO ontologyBLASTP
345779346525747hypothetical proteinBLASTP
346988347800813probable ABC transporterQuickGO ontologyBLASTP
3478183489901173probable ABC transporterQuickGO ontologyBLASTP
3490043502871284hypothetical proteinBLASTP
3503063515411236hypothetical proteinBLASTP
3515553527361182probable ABC transporterQuickGO ontologyBLASTP
3528513542841434hypothetical proteinBLASTP
354420355073654hypothetical proteinBLASTP