Pre_GI Gene

Host: NC_003366:842000 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003366:842000 Clostridium perfringens str. 13, complete genome

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a type A isolate from the soil. It can establish gas gangrene in a murine experimental model. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
842086842391306hypothetical proteinBLASTP
842638843288651probable deoxyuridine 5-triphosphate nucleotidohydrolaseQuickGO ontologyBLASTP
8437918451011311thiamine biosynthesis protein ThiCQuickGO ontologyBLASTP
8453398491393801phosphoribosylformylglycinamidine synthaseQuickGO ontologyBLASTP
849450849929480phosphoribosylaminoimidazole carboxylase catalytic subunitQuickGO ontologyBLASTP
849929850636708phosphoribosylaminoimidazole-succinocarboxamide synthaseQuickGO ontologyBLASTP
8506588521031446amidophosphoribosyltransferaseQuickGO ontologyBLASTP
8521048531051002phosphoribosylaminoimidazole synthetaseQuickGO ontologyBLASTP
853093853707615phosphoribosylglycinamide formyltransferaseQuickGO ontologyBLASTP
8537208552251506bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferaseIMP cyclohydrolaseQuickGO ontologyBLASTP
855632856591960phosphoribosylamine-glycine ligaseQuickGO ontologyBLASTP
85702885711386BLASTP
857504857866363hypothetical proteinBLASTP
858399858941543hypothetical proteinBLASTP
8590748604741401argininosuccinate lyaseQuickGO ontologyBLASTP