Pre_GI Gene

Host: NC_003911:253400 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003911:253400 Silicibacter pomeroyi DSS-3, complete genome

Host Lineage: Ruegeria pomeroyi; Ruegeria; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: Formerly Silicibacter pomeroyi, his marine bacterium is a member of the Roseobacter clade and was isolated off of the coast of Georgia in 1998. Dimethylsulfoniopropionate-degrading bacterium. Capable of degrading the organic sulfur compound DMSP (dimethylsulfoniopropionate) and can metabolize a number of sulfur compounds. DMSP is synthesized by marine algae and the degradation product dimethylsulfide contributes to the global sulfur cycle.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
2534002549141515aldehyde dehydrogenase family proteinQuickGO ontologyBLASTP
255034255972939glycerophosphoryl diester phosphodiesterase putativeQuickGO ontologyBLASTP
2559692570241056SN-glycerol-3-phosphate ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
257035257886852SN-glycerol-3-phosphate ABC transporter permease proteinQuickGO ontologyBLASTP
257886258806921SN-glycerol-3-phosphate ABC transporter permease proteinQuickGO ontologyBLASTP
2588512602361386SN-glycerol-3-phophate ABC transporter periplasmic SN-glycerol-3-phosphate-binding proteinQuickGO ontologyBLASTP
260302261231930transcriptional regulator LysR familyQuickGO ontologyBLASTP
261910263364145516S ribosomal RNAQuickGO ontologyBLASTP
26358026365677tRNA-IleQuickGO ontology
26373026380576tRNA-AlaQuickGO ontologyBLASTP
264255267149289523S ribosomal RNAQuickGO ontologyBLASTP
2673532674701185S ribosomal RNAQuickGO ontologyBLASTP
26766026958819291-deoxy-D-xylulose-5-phosphate synthaseQuickGO ontologyBLASTP
269616270482867farnesyl diphosphate synthaseQuickGO ontologyBLASTP
270485270703219exodeoxyribonuclease VII small subunitQuickGO ontologyBLASTP
270724271650927histone deacetylase family proteinQuickGO ontologyBLASTP
271676272377702DNA-binding response regulator PetRQuickGO ontologyBLASTP
272374272886513transcriptional regulator PetPQuickGO ontologyBLASTP
273044273910867branched-chain amino acid aminotransferaseQuickGO ontologyBLASTP
273966274406441organic hydroperoxide resistance proteinQuickGO ontologyBLASTP
274505274942438transcriptional regulator MarR familyQuickGO ontologyBLASTP
274955275284330copper-binding protein plastocyaninazurin familyQuickGO ontologyBLASTP
275275275799525hypothetical proteinBLASTP
275937276917981transcriptional regulator AraC familyQuickGO ontologyBLASTP
276985277395411hypothetical proteinBLASTP
2775692791371569alkaline phosphatase putativeQuickGO ontologyBLASTP