Pre_GI Gene

Host: NC_004129:6240904 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004129:6240904 Pseudomonas fluorescens Pf-5, complete genome

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
624090462421841281ethanolamine utilization protein EutHQuickGO ontologyBLASTP
624221062436461437ethanolamine utilization protein EutAQuickGO ontologyBLASTP
624367662458712196ethanolamine ammonia-lyaseQuickGO ontologyBLASTP
624592362473171395ethanolamine ammonia-lyase large subunitQuickGO ontologyBLASTP
62473296248153825ethanolamine ammonia-lyase small subunitQuickGO ontologyBLASTP
62482606248718459acetyltransferase GNAT familyQuickGO ontologyBLASTP
62489616249617657DedA family proteinQuickGO ontologyBLASTP
62496236250435813hypothetical proteinBLASTP
62506536251180528inorganic pyrophosphataseQuickGO ontologyBLASTP
62511966251585390lipoprotein putativeQuickGO ontology
62524116253295885sulfate adenylyltransferase subunit 2QuickGO ontologyBLASTP
625329562547161422hypothetical proteinBLASTP
625474662566231878sulfate adenylytransferase large subunitadenylylsulfate kinaseQuickGO ontologyBLASTP
625660362581081506mannose-1-phosphate guanylyltransferasemannose-6-phosphate isomeraseQuickGO ontologyBLASTP
625832662599331608hypothetical proteinBLASTP
625993462611991266hypothetical proteinBLASTP
62611966261609414GtrA family protein putativeQuickGO ontology
62616096262400792hypothetical proteinBLASTP
626239762633981002glycosyl transferase group 2 family proteinQuickGO ontologyBLASTP
626349162656442154hypothetical protein
62656206266555936GDP-6-deoxy-D-lyxo-4-hexulose reductase putativeQuickGO ontologyBLASTP
626653962675731035GDP-mannose 46-dehydrataseQuickGO ontologyBLASTP
626768562692171533glycosyl transferase group 1 family proteinQuickGO ontologyBLASTP
626921862719292712glycosyl transferase group 2 family proteinQuickGO ontologyBLASTP
627192262732891368ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
62732796274097819ABC-2 type transporteQuickGO ontologyBLASTP